Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00442 ATGGAAGCGGATTTCGCGACGAATGATATGGTCACACTCACACAGGATCCATTTGATGCCAACGATAATGCAAGTTCTTCGCTGTTTTTGGATAATAATGTAGCTGTTGAAGGGGAAAGATGTGGAATATGCATGGACGTTGTTATTGACAGGGGAGTTCTGGATTGCTGTCAGCACTGGTTCTGCTTTGTATGCATTGACAACTGGGCTACCATCACTAATCTTTGCCCACTTTGCCAGAATGAGTTTCAGTTGATCACTTGTGTTCCAGTATATGATACCATTGGAAGCACTAAAGTTGAAGATGACTCACTCTTCAGAGATGATGACTGGTCCATTGAAGGGAAAAATAATACTCTGTCATTTCCCTCCTACTACATCGACGAAAATGCAGTTATTTGCTTGGATGGTGATGGCTGCAAAGTTCGAAATGGATTGGCAACTATTGAAGAAGATTCTGGTCTTGATACATCAATTGCTTGTGATTCATGTGATATATGGTATCATGCCTTCTGCGTGGGATTTGATACTGAAGGTACATCCGAAAGTACATGGTTATGCCCAAGATGTGTGGTTGGTGAAGTTTCTAAAGGAACAAATAACAATTCAATAGAGAGGGCAACCGTGGAATGTCATCCAGATAACAATAATAGTGAATGTCATGCTGAGGATTCTTTTTCAGGAAAAGTGTCCGTGTCTGTTGCTGATACTGGAGAGACAGCTGTCGTTGTCTCTATAGTTGACCGAAATAAATGTGTTCCCGCAACAAGCGAGAAAGGTCTATTTCCTCTTGAAGTTGATGAGGATACACTGACTGAATCATGTAATTTAATGTCTGACACAAATAATCAGCAGAGGGACACAGAGAAGACAACTATGTTACCAATCATGAAGGATGAAGAACTGGAACTGTCCTTATCACACAATGTATCCGGTAACCTAGCTTCTAAATCCTTGGTGCATGATGATTTAAAGAGAAGTGCTAATGGAGCACGGAGTGAACTGAGTGGCTTTGATAGAACCAAGTTATTTGATGAGTCCCAAATCAAAACTAGCCCATCCAGAATTGAATCCGATGTGGGTCTTCATCTTGGTTTGTCAGTGGGCTCTTTTATATCAGTTGATAATGTGAACAAGAATGAAACAAAAGATCAAACAACTGAGGTCCTGCACTTGAGTCCAGAGGAATTATTTTTGAAAGGAAATGAAATTGAAACCGATGCTTGTAAGGAGAATACCAGAGTGACTATTGGAAAGAGGAAGCACATTGATTGCAGTTATGAGCAAGCTTGTATAGAAGTTGATGATGGAGATGCCAAGCCTGAACTTTCGGATGAGGTTTTGCGAAAGAAAATTAGAACAGCTGGCAGTCAACTGATTAGTGCTAATGACTCATCCGATGCTCATCTTTCAGACCATGCTCAAAAAAACCTTGCTTTAAAACATTCTCCAACAAAGGAGGTTGTGAAATCTGATATAATGAATATTGTTAAAGGAACGAACCGGAGGCTTTCAAAGGGACTTGCTGACACTAATGCTTGTGACAAGTTAGCTGAAAAGAAAGAAAATATGGCTGGATTGAGGGTTAAAAAAATTATGAAGAGAGTTTCTGATGATGGAGAATCATCCTTGGTAGTTCAAAATATAAGGAAGGAAATTAGAGAAGCTGTCCGAAACAAAACCTCAATAAACTTTGAGGAAAACTGTTTTGATGATAAGCTTCTTGTAGCATTTAGGGCTGCTATAACAGGGCCTAAAAATGAAACTGTAAATAAATTATCCCCTTCAGCTATAAAGGCAAAGAAGTCAATGTTGCAGAAAGGAAAAGTACGTGAACATCTAACAAAGAAAATTTTTGGCACTTCCAATGGAAGAAGAAAGCGTGCATGGGATAGGGACTGTGAAATTGAGTTTTGGAAATACCGTTGCATGAGAGCTACAAAGCCTGAAAAGATCGACACTTTAAAGTCAGTTCTTGATCTACTAAGAAAAAGTTCAGAGAGCCCAGAATCACAGCAAGCTCCTGAATGTCAGGTCAAGAATCCTATTCTTTCCAGGTTGTATTTAGCAGACACGTCTGTTTTACCGCGGAAAGAGGATGTCAAACCTCTCTCTGTACTTAAAACCATTGCTTGTTCAGAGCAGACTAAACAAAATAACCCATCAGGAAAAGGATCAAATATATCTCTTGATAATAATACTATTAAAACCACTGAGGTAAATAACCGTTCATCAAAGACTGGAGTTTGTTCTGCTGAAAAAAATGTAGATAAGAAAATTGTACATGGTCCAGTTAATGATAATTCAGCTTCTGGTAGAGTACAGTTAAGAAGTCACTCAGAAGGGACATCGGTTTCTTCTTCAGCTGGTGCCAAAGGTGGCACGAAGGAGTTAGGAGTTAAATCTGATGCGATGAAGAGTGATAAAAGAAAATGGGCCTTAGAGGTTCTTGCGAGGAAAACAGCTGCTGCAAGCAGGAACACAGCAAATGAGAGTCCCGAAGACAATGCAATTTTTAAAGGAAATTATCCTTTGCTTGCCCAATTACCAGCTGATATGAGACCAGTATTGGCACCTTGTTGCCACAATAAAATTCCTATATCAGTGAGGCAGACACAGCTTTACCGCTTAACAGAGCGCTTATTGAGGAACACAAATATGCCAGTCATTTGCAGAACTGCAGATACAGAATTGGCTGTAGCAGATGCAATTAATATTGAAAAAGAGGTTGCTGACAGATCAAACAGCAAGCTTGTGTATCTGAACCTTTGTTCACAAGAGCTCTTGCATCGCACAAATAACACAAAATCCAATGAGGCCACAGATACAAATCCACCAGCTCCATCAGCGGCATATACTGATCAATCAGAACTAAATACTGATGATAACACTGACCCTGAAGTTCAAATAGCCTTGAAAAATGCTGGTCTATTGTCTGATTCTCCACCTAGCAGTCCACATAAGAACAAAGAAATATGTAATGAAGATGATATGTCAGGGCCTGATAATATACTTGAACTGGATTCTAATCCTGACCTGGATATTTATGGTGATTTTGAGTATGATTTGGACGATGAAGATTTCATTGGTGCTAGTACAACGAAGGTCTCAAACCCAAAACAAGAGCAAAGTGAGTCAAAAGTGAAACTCGTTTTCTCCACCATGAACTTGAAAAAAACAGATAATGCTATGGACTGTGCAGACTGTGAGGGGTCTGAAAACAATGAAGTGCCAGGAGATGCCTCTCGCTCACCAAACTGTCACGATGATGCAGTCCATCGGGATTCTGCAATTGATGCAGAGATTGGCCAGCCTTCTGTTTCTTCTGAGTTCCAATTATGTGAGGGTGCTGTTGAGCCAGTTGATTCAGAATTTGAAGAATTATATGGCCCTGATAAAGAACCAGTTATAAAAAAATTTCCAGATGATGAATCTAGATCATTACGTGGAGAGGGCAATGACTTCCATAGTGACGATAAACATGTCTCAGATAAAGCAGTAAATGCTTTGAAATCGGGGAACGAGAATCTCACAGAAAATGTGTCAGTCACTACCATCGCTGACAAATCTTCTAATATATCTGACACCGATGAAAATTTCCGAAGGAAGGAAGAGAACTCAGGCATCACTGCTAAGCAGTCTGACTCTGTAAATCATGTAACAAGGAAGGTAGAAGCCTACATCAAGGAGCATATTAGGCCACTGTGCAAGAGTGGTGTGATCACCGCTGAACAATACAGGTGGGCTGTTGCAAAAACAACTGATAAGCACTACCCGACCCAGCTAGAAAACGATGAGCTTTATCAGATTAGAACGATGAACATTCTCTCCTATCCCCACTTTCACATCAACAAATCCTATCGCACTCACCGCCATGGAACACTGGAGCAAACGCATTCCCATCGGAAAAGGAATATTCCGACGCATGTTTTTCTCCGGCGACCATTCACAGTGCGTTGCAAGTCCTCTTCCTCAGGTGGTGAGGAAGATTTTGTTAGCAGGGTTTTGGAGGAGAACCCAAGCCAAGTGCAACCCAAATATTTAATTGGCGAAAAGTTCTATAATTTGAAAGAAAAAGAGAACTTGGGTAAATCTTCGAATGTGAGTATTTTTGATGTGCTGTCTAAGAGGTTGAGCTTGAAGAAGCCACAGAACAAGGGTGAGAATGAGGTTTCGGCAGAGAGAGATTCTGTGTACTTGAAAGACTTGCTTAAGGAGTATAAAGGGAAACTTTACGTGCCTGAGCAAATTTTCGGCAGAGAGTTATCGCAAGAGGAAGAGTTTGATAAGAGTTTACAATCTTTGCCGAAAATGAGCATTGAAGAGTTTAGGAAAGCTATGAGTAAAGACAAGATCAAGTTGATAACTTCAAAGGGTGATGGAGGAAGTGGTTATAGGGATTTTATTGTGGAATTGAAGGAAATCCCTGGTGATAAAAGCTTACACACAACCGAATGGGCTCTCAGGGTGGATAATAGTGAAGCTCAAGAAATTTTGCAGGACTATACTGGACCACGATATGAGATAGAGAGGAGGCATACTATGTCTTGGGTGGGAAAAATGCCAGAGTACCCTCATCCAGTTGCATCTTCCATTTCTAGCAGAATGATGGTTGAGCTTGGAGTGGTGACAGTATTTGTGGGTTTGGCAGCAATTCTAGTTGGCGGCTTCCTTGCATCAGCAATATTTGCTGTTACCAGTTTTATATTTGTGACAACTGTCTATGTTGCGTGGCCTATAGCCAAACCATTTCTCAAGCTTTTTCTTGGCATTGCTTTGGCAATTTTGGAGAAGATTTGGGATAATATTGTTGATTTTTTCAGTGATGGTGGCATTTTCTCTAAGTTGTATGAGTTGTATACTTTTGGTGGTATATCTGCCAGCATTGAGGCATTGAAACCAATTATGATTGTAGTTTTGACTATGGTTCTTCTTGTTCGCTTCACTCTTTCAAGAAGACCTAAAAACTTCAGGAAGTGGGATCTTTGGCAGGGAATAGACTTCTCACGATCAAAAGCTGAAGCTCGTGTTGATGGTTCAACTGGAGTTAAATTTTGTGATGTAGCTGGAATTGATGAGGCGGTAGAGGAACTTCAAGAGTTGGTGAGGTACCTAAAAAATCCCGAGCTATTTGATAAAATGGGGATCAAACCTCCACATGGCGTTCTTTTGGAGGGCCCTCCTGGTTGTGGCAAGACCCTTGTAGCCAAGGCAATAGCTGGTGAAGCTGGTGTTCCATTTTATCAAATGGCTGGATCAGAATTTGTGGAAGTTTTAGTTGGTGTTGGTTCTGCACGTATTAGGGATTTATTTAAAAGAGCCAAGGTAAACAAACCATCAGTTATATTCATAGATGAAATTGATGCTCTGGCAACTAGGCGTCAAGGTATTTTCAAGGAGTCCACAGATCACCTGTATAATGCAGCCACCCAGGAAAGAGAAACTACGTTGAACCAATTGTTGATAGAGCTTGATGGCTTTGATACTGGAAAGGGTGTCATATTTCTGGCTGCCACAAATCGTAGGGATTTGTTGGATCCTGCACTTCTTCGTCCAGGTCGCTTTGATCGAAAGATCAGGATTCGCCCTCCAAGTGCAAAAGGAAGACTTGATATTTTGAAAATTCATGCTAGCAAAGTAAAAATGTCAGAGTCTGTTGATTTATCCAGCTACGCACAGAACCTACCTGGATGGACCGGAGCAAGATTGGCACAATTGGTCCAAGAGGCTGCTCTTGTGGCTGTCAGGAAAGGACATAACTCAATTCTTCAGTCAGATATGGATGATGCAGTTGACAGACTTACAGTAGGACCCAAACGTATTGGAATAGAGTTAGGTTATCAAGGACAGTGTCGTAGAGCTACTTCTGAAGTGGGAGTTGCATTAACTTCTCATCTGCTCCGGCGATATGAGAATGCAAAAGTTGAATGCTGTGATCGTATCTCAATAGTACCTCGTGGTCAGACATTGTCTCAATTGATATTTCATCGACTTGATGATGAATCATATATGTTTGAACGCCGACCTCAATTGCTGCATCGTCTTCAGGTTCTTCTTGGAGGTAGAGCTGCTGAGGAGGTCATCTATGGACGTGACACATCAAGAGCCTCAGTTGACTACCTTGCAGATGCATCCTGGCTTGCTCGCAAAATATTAACCATATGGAACTTGGAGAATCCAATGGTCATACATGGAGAACCACCACCTTGGAGGAAGTCAGTTAAATTTGTGGGACCTAGACTGGATTTTGAAGGGTCTCTTTATGATGACTACAATTTGATTGAACCCCCATTAAATTTTAAGCTGGATGATCACGCTGCACAAAGGACTGAGGAGTTGATACGTGACATGTACAGAAAAACTGTCTCTCTCCTTACGAGGCACCATGCAGCTTTGCTCAAAGCTGTTAAGGTTCTTCTCAATCAGAAGGAAATCAGTGGTGAGGAACTAGACTTCATTTTGAACAAATACCCTCCACAAACACCTTTACATCTTTTGGAGGAGGAGGAAAATCCTGGCTACCTTCCTTTCAACAATGAACAAGTGCAGGATTTGGAGTACGCCTTACAAACTCAATCAAAGGAAGAAACCGTGTGA 6597 0.4103 MEADFATNDMVTLTQDPFDANDNASSSLFLDNNVAVEGERCGICMDVVIDRGVLDCCQHWFCFVCIDNWATITNLCPLCQNEFQLITCVPVYDTIGSTKVEDDSLFRDDDWSIEGKNNTLSFPSYYIDENAVICLDGDGCKVRNGLATIEEDSGLDTSIACDSCDIWYHAFCVGFDTEGTSESTWLCPRCVVGEVSKGTNNNSIERATVECHPDNNNSECHAEDSFSGKVSVSVADTGETAVVVSIVDRNKCVPATSEKGLFPLEVDEDTLTESCNLMSDTNNQQRDTEKTTMLPIMKDEELELSLSHNVSGNLASKSLVHDDLKRSANGARSELSGFDRTKLFDESQIKTSPSRIESDVGLHLGLSVGSFISVDNVNKNETKDQTTEVLHLSPEELFLKGNEIETDACKENTRVTIGKRKHIDCSYEQACIEVDDGDAKPELSDEVLRKKIRTAGSQLISANDSSDAHLSDHAQKNLALKHSPTKEVVKSDIMNIVKGTNRRLSKGLADTNACDKLAEKKENMAGLRVKKIMKRVSDDGESSLVVQNIRKEIREAVRNKTSINFEENCFDDKLLVAFRAAITGPKNETVNKLSPSAIKAKKSMLQKGKVREHLTKKIFGTSNGRRKRAWDRDCEIEFWKYRCMRATKPEKIDTLKSVLDLLRKSSESPESQQAPECQVKNPILSRLYLADTSVLPRKEDVKPLSVLKTIACSEQTKQNNPSGKGSNISLDNNTIKTTEVNNRSSKTGVCSAEKNVDKKIVHGPVNDNSASGRVQLRSHSEGTSVSSSAGAKGGTKELGVKSDAMKSDKRKWALEVLARKTAAASRNTANESPEDNAIFKGNYPLLAQLPADMRPVLAPCCHNKIPISVRQTQLYRLTERLLRNTNMPVICRTADTELAVADAINIEKEVADRSNSKLVYLNLCSQELLHRTNNTKSNEATDTNPPAPSAAYTDQSELNTDDNTDPEVQIALKNAGLLSDSPPSSPHKNKEICNEDDMSGPDNILELDSNPDLDIYGDFEYDLDDEDFIGASTTKVSNPKQEQSESKVKLVFSTMNLKKTDNAMDCADCEGSENNEVPGDASRSPNCHDDAVHRDSAIDAEIGQPSVSSEFQLCEGAVEPVDSEFEELYGPDKEPVIKKFPDDESRSLRGEGNDFHSDDKHVSDKAVNALKSGNENLTENVSVTTIADKSSNISDTDENFRRKEENSGITAKQSDSVNHVTRKVEAYIKEHIRPLCKSGVITAEQYRWAVAKTTDKHYPTQLENDELYQIRTMNILSYPHFHINKSYRTHRHGTLEQTHSHRKRNIPTHVFLRRPFTVRCKSSSSGGEEDFVSRVLEENPSQVQPKYLIGEKFYNLKEKENLGKSSNVSIFDVLSKRLSLKKPQNKGENEVSAERDSVYLKDLLKEYKGKLYVPEQIFGRELSQEEEFDKSLQSLPKMSIEEFRKAMSKDKIKLITSKGDGGSGYRDFIVELKEIPGDKSLHTTEWALRVDNSEAQEILQDYTGPRYEIERRHTMSWVGKMPEYPHPVASSISSRMMVELGVVTVFVGLAAILVGGFLASAIFAVTSFIFVTTVYVAWPIAKPFLKLFLGIALAILEKIWDNIVDFFSDGGIFSKLYELYTFGGISASIEALKPIMIVVLTMVLLVRFTLSRRPKNFRKWDLWQGIDFSRSKAEARVDGSTGVKFCDVAGIDEAVEELQELVRYLKNPELFDKMGIKPPHGVLLEGPPGCGKTLVAKAIAGEAGVPFYQMAGSEFVEVLVGVGSARIRDLFKRAKVNKPSVIFIDEIDALATRRQGIFKESTDHLYNAATQERETTLNQLLIELDGFDTGKGVIFLAATNRRDLLDPALLRPGRFDRKIRIRPPSAKGRLDILKIHASKVKMSESVDLSSYAQNLPGWTGARLAQLVQEAALVAVRKGHNSILQSDMDDAVDRLTVGPKRIGIELGYQGQCRRATSEVGVALTSHLLRRYENAKVECCDRISIVPRGQTLSQLIFHRLDDESYMFERRPQLLHRLQVLLGGRAAEEVIYGRDTSRASVDYLADASWLARKILTIWNLENPMVIHGEPPPWRKSVKFVGPRLDFEGSLYDDYNLIEPPLNFKLDDHAAQRTEELIRDMYRKTVSLLTRHHAALLKAVKVLLNQKEISGEELDFILNKYPPQTPLHLLEEEENPGYLPFNNEQVQDLEYALQTQSKEETV* 2199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00442 2198 MobiDBLite consensus disorder prediction 768 791 - -
Rops2g00442 2198 CDD RecA-like_FtsH 1683 1861 - -
Rops2g00442 2198 SMART PHD_3 139 191 IPR001965 -
Rops2g00442 2198 SUPERFAMILY RING/U-box 34 86 - -
Rops2g00442 2198 Gene3D Peptidase M41 1937 2160 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Rops2g00442 2198 SUPERFAMILY FtsH protease domain-like 1952 2161 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Rops2g00442 2198 ProSiteProfiles Zinc finger RING-type profile. 41 80 IPR001841 -
Rops2g00442 2198 MobiDBLite consensus disorder prediction 716 751 - -
Rops2g00442 2198 ProSiteProfiles Zinc finger PHD-type profile. 73 193 IPR019787 -
Rops2g00442 2198 SMART ring_2 131 190 IPR001841 -
Rops2g00442 2198 SMART ring_2 41 79 IPR001841 -
Rops2g00442 2198 Pfam Zinc finger, C3HC4 type (RING finger) 41 79 IPR018957 GO:0046872
Rops2g00442 2198 MobiDBLite consensus disorder prediction 935 963 - -
Rops2g00442 2198 FunFam ATP-dependent zinc metalloprotease FTSH 7, chloroplastic 1668 1862 - -
Rops2g00442 2198 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1683 1938 IPR027417 -
Rops2g00442 2198 MobiDBLite consensus disorder prediction 716 804 - -
Rops2g00442 2198 Pfam Peptidase family M41 1957 2057 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Rops2g00442 2198 SUPERFAMILY FYVE/PHD zinc finger 156 193 IPR011011 -
Rops2g00442 2198 MobiDBLite consensus disorder prediction 1134 1160 - -
Rops2g00442 2198 Gene3D - 1864 1934 - -
Rops2g00442 2198 Gene3D - 1674 1863 IPR027417 -
Rops2g00442 2198 Pfam AAA+ lid domain 1885 1928 IPR041569 -
Rops2g00442 2198 PANTHER METALLOPROTEASE M41 FTSH 1329 2159 - -
Rops2g00442 2198 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 191 IPR013083 -
Rops2g00442 2198 Pfam PHD-finger 156 191 IPR019787 -
Rops2g00442 2198 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 117 IPR013083 -
Rops2g00442 2198 FunFam ATP-dependent zinc metalloprotease FtsH 1864 1938 - -
Rops2g00442 2198 MobiDBLite consensus disorder prediction 975 1001 - -
Rops2g00442 2198 ProSitePatterns Zinc finger RING-type signature. 57 66 IPR017907 -
Rops2g00442 2198 FunFam Probable inactive ATP-dependent zinc metalloprotease FTSHI 1, chloroplastic 1936 2160 - -
Rops2g00442 2198 SMART AAA_5 1718 1865 IPR003593 GO:0016887
Rops2g00442 2198 Pfam ATPase family associated with various cellular activities (AAA) 1722 1862 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00442 Rops-Chr2 6354507 6378583 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00442 1679 2057 Miscellaneous Gene Families AT3G47060 44.764 1.63e-84 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Rops2g00442 AAA 4.7e-41 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00442 - - gmx:100808102 1911.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00442 2 6354507 6378583 Rops2g00442 2 6354507 6378583 ECH