Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00430 ATGTTAGAGGACTCAAGGTGGGAGATGGGTGTTCCACAAACTCCAACCCCCTCTCCACATTTGTACCCACAAGAAATTCAGCTTAAACTTTACCAGGCCTTCATATTCTCAATTCCCATACTCTTTTCCATTATTCTTGTTCTCTTGTTTTACTTGTTCTACCTCAAGAGGAGAGCTTCCTATCTCTCATCCCCACCTCTTCACATACTTCCCAGGACTGCCAATCCACAAACTTCATATCCCTTTCCTTCCTCACGTTGCCGTTTAGATCTCACGGTGCAATTTCTGGACAAACTTTCAAGAATTTTATTTGATGAGGATCTGAGAACAAGGGATTCAGTATGTTGTGTTTGTTTGGGAGAATTTGAGCTAAATGAAGAGCTGCTACAGATTCCTTATTGCAAGCATGTGTTTCACATAGAGTGCATACATAACTGGCTGCAATCAAACTCTACATGTCCACTTTGTAGATGTTCCATCATCCCCACAACCAAGTTCCTTAATCCAACACCACCTATTTTATCAGAGACACCCCAGCATGGTGATATTTCAGGCTCTTCATCACACATTATATCATTGCCTCCACAAGTAGAAGATGAAGCTGGTGCTTCCTAA 615 0.4179 MLEDSRWEMGVPQTPTPSPHLYPQEIQLKLYQAFIFSIPILFSIILVLLFYLFYLKRRASYLSSPPLHILPRTANPQTSYPFPSSRCRLDLTVQFLDKLSRILFDEDLRTRDSVCCVCLGEFELNEELLQIPYCKHVFHIECIHNWLQSNSTCPLCRCSIIPTTKFLNPTPPILSETPQHGDISGSSSHIISLPPQVEDEAGAS* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00430 204 ProSiteProfiles Zinc finger RING-type profile. 115 157 IPR001841 -
Rops2g00430 204 Pfam Ring finger domain 115 157 IPR001841 -
Rops2g00430 204 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 162 IPR013083 -
Rops2g00430 204 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 20 179 - -
Rops2g00430 204 SMART ring_2 115 156 IPR001841 -
Rops2g00430 204 FunFam Putative E3 ubiquitin-protein ligase RHA4A isoform A 84 162 - -
Rops2g00430 204 CDD RING-H2_EL5-like 115 157 - -
Rops2g00430 204 SUPERFAMILY RING/U-box 94 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00430 Rops-Chr2 6261321 6263098 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00430 11 162 C3H Transcription Factor Family AT4G10150 38.608 4.45e-32 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00430 K19039 - gmx:100806499 301.982