Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00404 ATGGCAAAGGAAAGAAGATTGAGAGCGCTTAGTTTGGCGCTTTCGACGCCCATAGGTGGAAGAAGGCCATGCCATGCCATTGAGTTTCGATTTAGATCCAGATTCATGGGGATTTGCTTCAGCATTGAAGAACAAAACCACTTATCTCTCTCCCATTCAAATACAAAACCTAAACCTACAGGATATGAATCTGGTGCATCAAGAACTCCATTAAGTTCGAGTCCCATGAATATCAAAGATCTTCGCCAAAGTGCTGGATACAGCAACGTTGATATTTTCACGTACGAGGAACTGAGACTCGCCACCAAGCATTTTCGTCCTGACTTAATTTTGGGAGAGGGTGGATTTGGAGTTGTATATAAAGGAGTTATAGATGATAGTGTGAGGTCAGGTTACAAATCCACTGAAGTCGCCATTAAGGAACTCAATCGCGAAGGGTTTCAAGGCGATAGAGAATGGCTCGCTGAAGTTAACTATTTAGGTCAATTCAGTCACCCAAATCTTGTGAAGCTCATTGGATACTGCTGTGAGGATGAACACCGGTTATTGGTCTATGAGTACATGGCAAGTGGGAGCTTGGAGAAACATCTTTTTCGCAGAGTGGGCTCAACATTGACTTGGTCAAAAAGAATGAAGATTGCTTTACATGCTGCAAGAGGGCTTGCTTTTCTTCATGGTGCAGAAAGGCCTATCATATATCGTGACTTCAAGACATCAAATATCTTGCTAGATGCGGATTTCAATGCAAAGCTTTCAGACTTTGGCCTTGCAAAGGATGGGCCGATGGGGGACCAAACCCATGTTTCGACACGTGTAATGGGCACTTACGGATATGCTGCTCCTGAGTATGTCATGACTGGGCATTTGACTGCTCGAAGCGATGTGTATGGTTTTGGGGTGGTGCTGCTTGAAATGCTCATTGGCAGGAGAGCATTAGATAAGAGCAGGCCCAGCCGAGAGCACAACTTGGTTGAATGGGCACGCCCGCTGTTGAATCATAATAAAAAACTACTGAAAATTTTAGACCCAAAAATAGAAGGGCAATATTCAAGTAAAACTGCAATAAAGGTGGCCCATTTAGCATACCAATGTCTTAGCCAAAACCCGAAAGGCAGACCTCTCATGAGCCAGGTTGTTGAAATTCTTGAAAACTTTCAGTCAAAGGGCGAAAATGAGGAAGAAGATCAAATGCTTCAAAGTGGTGGCAGCAGCATAACCATTTATGAGGTTCCAAAGGACAGCAATAACACTCCAACATAG 1260 0.4365 MAKERRLRALSLALSTPIGGRRPCHAIEFRFRSRFMGICFSIEEQNHLSLSHSNTKPKPTGYESGASRTPLSSSPMNIKDLRQSAGYSNVDIFTYEELRLATKHFRPDLILGEGGFGVVYKGVIDDSVRSGYKSTEVAIKELNREGFQGDREWLAEVNYLGQFSHPNLVKLIGYCCEDEHRLLVYEYMASGSLEKHLFRRVGSTLTWSKRMKIALHAARGLAFLHGAERPIIYRDFKTSNILLDADFNAKLSDFGLAKDGPMGDQTHVSTRVMGTYGYAAPEYVMTGHLTARSDVYGFGVVLLEMLIGRRALDKSRPSREHNLVEWARPLLNHNKKLLKILDPKIEGQYSSKTAIKVAHLAYQCLSQNPKGRPLMSQVVEILENFQSKGENEEEDQMLQSGGSSITIYEVPKDSNNTPT* 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00404 419 Gene3D Phosphorylase Kinase; domain 1 79 187 - -
Rops2g00404 419 FunFam Probable serine/threonine-protein kinase PBL8 188 401 - -
Rops2g00404 419 SUPERFAMILY Protein kinase-like (PK-like) 85 383 IPR011009 -
Rops2g00404 419 MobiDBLite consensus disorder prediction 396 419 - -
Rops2g00404 419 PANTHER OS01G0588500 PROTEIN-RELATED 67 386 - -
Rops2g00404 419 Gene3D Transferase(Phosphotransferase) domain 1 188 406 - -
Rops2g00404 419 ProSitePatterns Protein kinases ATP-binding region signature. 111 140 IPR017441 GO:0005524
Rops2g00404 419 Pfam Protein tyrosine and serine/threonine kinase 110 382 IPR001245 GO:0004672|GO:0006468
Rops2g00404 419 MobiDBLite consensus disorder prediction 388 419 - -
Rops2g00404 419 MobiDBLite consensus disorder prediction 50 75 - -
Rops2g00404 419 CDD STKc_IRAK 111 385 - -
Rops2g00404 419 FunFam Serine/threonine-protein kinase BIK1 72 187 - -
Rops2g00404 419 ProSitePatterns Serine/Threonine protein kinases active-site signature. 231 243 IPR008271 GO:0004672|GO:0006468
Rops2g00404 419 ProSiteProfiles Protein kinase domain profile. 105 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00404 Rops-Chr2 5936487 5941257 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00404 93 382 Glycoside Hydrolase AT3G07070 51.536 7.06e-101 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Rops2g00404 PK_Tyr_Ser-Thr 4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00404 - - gmx:100800465 707.983