LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops2g00400	ATGTCAAGGTCAATTCCAGAGAAGAAGCTAGGTGCAGGACGTGTGGTGGCAGTAGCAATTGAGAACAACAAAACAAGCCAATATGCAGCAAAATGGGCAGTTGATAATCTTCTTCCCAAAGACCAACATCTCTTATTAGTCCATGTTAGACAAAGAGCATCTTCCATTCCTACACCAATGGGAAACCATGTATCACTTGATAGCAATGATGATGTGGCTAGAGCATACAAGCAACAAATGGACAATGAATCCAGGGAGCTTTTTGCTTCATTTCGTGTCTTTTGCAATAGAAAGAGTATACAATGCAAAGAAATCTTGTTGGAGGACACGGATATATGTAAGGGATTAACAGAAGGTATCTCCACGTATTCCATTGAGCTTCTGGTACTTGGGGCACCATCAAGGGGTGGTCTTGTCAGAAGATTTAGGACAACAGATGTTCCAAGTGTTGTGTCTAAAGGGGCACCCCCATTCTGCACTGTGTACATTATTTCCAAAGGAAAAATCTCTTCTGTGAAAACTGCTACTGCTACACTTACTCCAAAGCCTACACCCCGTAACAATGCATTGCTGACACATCCTGAGAGAATGGACACACTAATGCGCAACCACCCACCACGACCATCAATAGAAAAGCCAGGATATGCGGCTCGCCAGCTAATGGATGAAGATGAAATCAAATCACCATTCACAAGATTTGGAAGACCAATGCACAGATCATACGAGTCCACAATCCCTGACTCTGATATTTCATTCGTGAGCAGTGGACGGCCAAGTGTTGATAGGATGTTCCCTTCATTGTATGATGAGATGGATTCTGGAGTGACCCCTCGGCTTTCATCAGGCTCAGATTATGATGTCAGAAGCTTCGGTTCATCTTTCTCAGGTGCTAAGTCAATTGATCATGGTGACTACTCGTTCAGTTCACAAGACAGTGGGATTTCAATGTCATCATCAGCAAGGTTATCAAATGGGGATGATGTGGACGCCGAAATGAGGAGACTGAGGCTAGAACTGAAGCAAACAATGGAAATGTACAGTACAGCTTGCAAGGAAGCTCTGACAGCACAGCAAAAGACACTGGAACTTCAGCGTTGGAAATTGGAAGAACAAAGAAAATTGGAAGAGGCACGAATAGGTGAAGAAACAGCATTGGCAATTGCTGAGAAGGAGAAAGCAAAATGTAAAGTTGCCATGGAGGCAGCAGAAGCATCTCGAAAAATTGCGGAGTTAGAAGCACAAAAAAGAATGAATGCAGAAATGAAAGCCCAGACAGAATCTGAGCAGAAGAAGAGGACAGGAGATTCTTTCTCACATGGTCCAGCCAGGTACAGAAAATACTCTATTGAGGAAATAGAAGAAGCAACAAAATTCTTTTCCATCTCTCTCAAGATTGGTGAAGGAGGTTATGGGCCAGTCTACAGGGCTGAACTAGATCATACCCCAGTTGCAATAAAAGTGTTAAAACCAGATGCAGCTCAAGGACGGGCACAGTTTCAGCAGGAGGTTGAAGTGCTAAGTTGTATAAGGCATCCAAACATGGTTCTCCTTCTTGGAGCATGTCCAGAGTATGGTTGCCTAGTGTATGAGCACATGGCTAATGGAAGCTTGGATGATTGCCTCTTCCGGAGAAGCAGTAACATGCCAGTTCTTCCCTGGCAACTAAGATTCCGAATTGCAGCAGAGATTGCCACTGGCCTCCTTTTCCTTCACCAGACAAAACCAGAACCACTGGTGCACCGTGACTTAAAACCTGGAAACATTTTGCTTGACCGTAACTTTGTGAGCAAGATCAGTGATGTGGGGTTGGCAAGGCTTGTCCCGCCTTCAGTTGCAGACACTGTGACACAATATCGCATGACATCAACTGCTGGAACTTTCTGTTACATTGATCCTGAGTACCAACAAACGGGCATGCTAGGAATCAAATCTGATATTTACTCACTCGGGATCATGCTTCTACAAATGGTAACAGCAAAGCCACCAATGGGTTTGACTCACCATGTTTCAAGAGCTATTGAGAGGGGTACATTTTCTGAGATGCTTGATCCAGCTGTTGAGGACTGGCCAGTTGAACATGCCTTGCATTTTGCCAAGCTTGCCTTGCAGTGTGCAGAAATGAGAAGAAAAGATAGACCTGATCTTGGAAAAGTTGTGTTGCCTGAGCTCAACAAACTCACAGATTTTGCTGAAGAAAACATGCCAATGATGATGATGATGTTTGGTGGTAACACAGGATTCAATGCAAGAAGTAACAACTATTACTCACGTTCCACATTTTCCTCCTCAGCTCAAGACTCTATGAGTGAATCACAGTCACTGTCTGGAATGTCCGGATTTGAAAGCCGCTCAAGCACATCATCACTGGGAAATAATTTAAACTACAGTTCATAG	2394	0.4382	MSRSIPEKKLGAGRVVAVAIENNKTSQYAAKWAVDNLLPKDQHLLLVHVRQRASSIPTPMGNHVSLDSNDDVARAYKQQMDNESRELFASFRVFCNRKSIQCKEILLEDTDICKGLTEGISTYSIELLVLGAPSRGGLVRRFRTTDVPSVVSKGAPPFCTVYIISKGKISSVKTATATLTPKPTPRNNALLTHPERMDTLMRNHPPRPSIEKPGYAARQLMDEDEIKSPFTRFGRPMHRSYESTIPDSDISFVSSGRPSVDRMFPSLYDEMDSGVTPRLSSGSDYDVRSFGSSFSGAKSIDHGDYSFSSQDSGISMSSSARLSNGDDVDAEMRRLRLELKQTMEMYSTACKEALTAQQKTLELQRWKLEEQRKLEEARIGEETALAIAEKEKAKCKVAMEAAEASRKIAELEAQKRMNAEMKAQTESEQKKRTGDSFSHGPARYRKYSIEEIEEATKFFSISLKIGEGGYGPVYRAELDHTPVAIKVLKPDAAQGRAQFQQEVEVLSCIRHPNMVLLLGACPEYGCLVYEHMANGSLDDCLFRRSSNMPVLPWQLRFRIAAEIATGLLFLHQTKPEPLVHRDLKPGNILLDRNFVSKISDVGLARLVPPSVADTVTQYRMTSTAGTFCYIDPEYQQTGMLGIKSDIYSLGIMLLQMVTAKPPMGLTHHVSRAIERGTFSEMLDPAVEDWPVEHALHFAKLALQCAEMRRKDRPDLGKVVLPELNKLTDFAEENMPMMMMMFGGNTGFNARSNNYYSRSTFSSSAQDSMSESQSLSGMSGFESRSSTSSLGNNLNYSS*	798

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops2g00400	797	SUPERFAMILY	Protein kinase-like (PK-like)	438	719	IPR011009	-
	Rops2g00400	797	Pfam	Protein kinase domain	462	714	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops2g00400	797	CDD	STK_N	15	167	-	-
	Rops2g00400	797	MobiDBLite	consensus disorder prediction	419	439	-	-
	Rops2g00400	797	FunFam	Adenine nucleotide alpha hydrolase-like domain kinase	432	531	-	-
	Rops2g00400	797	SMART	serkin_6	459	730	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops2g00400	797	PANTHER	OS02G0152300 PROTEIN	15	776	-	-
	Rops2g00400	797	ProSiteProfiles	Protein kinase domain profile.	459	723	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Rops2g00400	797	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	578	590	IPR008271	GO:0004672\|GO:0006468
	Rops2g00400	797	Coils	Coil	351	371	-	-
	Rops2g00400	797	Coils	Coil	408	431	-	-
	Rops2g00400	797	FunFam	U-box domain-containing protein 51	532	733	-	-
	Rops2g00400	797	MobiDBLite	consensus disorder prediction	765	797	-	-
	Rops2g00400	797	Gene3D	HUPs	14	164	IPR014729	-
	Rops2g00400	797	Gene3D	Transferase(Phosphotransferase) domain 1	532	739	-	-
	Rops2g00400	797	SUPERFAMILY	Adenine nucleotide alpha hydrolases-like	16	147	-	-
	Rops2g00400	797	Coils	Coil	385	405	-	-
	Rops2g00400	797	Gene3D	Phosphorylase Kinase; domain 1	439	531	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops2g00400	Rops-Chr2	5868347	5872880	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops2g00400	7	746	Receptor kinase-like Gene Family	AT1G78940	55.381	0.0	753

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-IXb	Rops2g00400		Pkinase	1.7e-38	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops2g00400	-		-	gmx:100803837	1222.22