Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00396 ATGAAGACGCAGGAAGAAGACGGTGCCGCCACCGTCGCAGCAACCAACCCTCGTAAAGTTGGAGGAGAGAAGAAGAGTATAAACCCGGAGCTATGGCAAGCTTGTGCGGGGCCATTGGTTAACCTGCCTTCACCTGGCACTCACGTAGTTTACTTCCCTCAAGGACACAGCGAACAGGTTGCGGCATCTTTGAAGAAAGATGTGGATGTTCAAACCCCAAACTATCCCAATCTTCCCTCCAAGTTACCGTGTCTCCTTCACAATGTCACCTTGCATGCAGATCCAGAAACAGATGAAGTATATGCTCAGATGACACTTCAGCCAGTGCCTTCTTTTGACACGGATGCCTTATTAAGATCAGATATTTCTCTCAAGTCGAGCAAGCCACAACCTGAGTTTTTCTGTAAACAACTGACAGCAAGTGATACAAGTACTCATGGAGGTTTCTCCGTACCTCGCCGTGCTGCAGAGAAGATTTTCCCTCCTCTTGATTACTCTGTCCAACCTCCTGCTCAAGAACTTGTGGCCAGGGATTTGCATGATAATGTTTGGAGATTCCGCCATGTATACCGTGGACAACCAAAACGTCACTTGCTTACAACTGGATGGAGTTTATTTGTCAGCGGAAAGAGGCTTTTAGCTGGTGATTCTGTTTTATTTATCAGAGATGAAAAGCAGCAGCTTCTTCTGGGTATTAGACGAGCTAACAGGCAACCCACCAATTTATCATCATCAGTACTATCTAGTGATAGTATGCACATTGGGATTCTGGCTGCAGCTGCTCATGCTGCTGCAAACAATAGTCCCTTCACAGTGTTTTATAATCCTAGGGCCAGTCCCTCTGAATTTGTTATTCCTTTAGCCAAGTACTACAAGGCAGTGTATAGCCACCAAATATCACCTGGCATGCGCTTTCGAATGATGTTTGAAACAGAAGACCCAGGAACAAGAAGATTTGTGGGTACAATTATAGGTGTCAGTGATCTGGATTCTGTGAGATGGAAAAACTCGCAATGGCGTAATTTGCAGGTTGGTTGGGATGAATCGACTGCCGGGGAAAGGCGAAGTAGGGTCTCGATCTGGGAAATTGAACCTGTTACTGCTCCATTTTTAATCTGCCCATCTCCATTCTTCAGATCCAAGAGACCAAGACCAGCAGGAATGCCTGATGATGAGCCATCTGATTTTACGATGCCTTGGCTTGGTGATGATATGTATATAAAGGATCCCCAGTCTCTCCCTGGCTTGAGCTTAGCTCAATGGATGAACATACAACAAAATCCTGCTCTGGCTTGCTCAGTGCAACCAAATTATGTGCCTTCTATGTCTGGATCTGTTCTACAAAATCTTCCTGGCTCTGATATTGCCCATCAGCTGGGATTTTCTACTCCACAAATCTCTCAGTCAAACAATGCAGCCTTAAATGCTCAGAGGATACTTCAGACTCCCCAGCAACTTGATCACCTTCAGAAGCTACTGTCCACATCTAGTGCATTGGGAACAGTCATACAGTCAGAGCAACAGTTGGGTGATATCACTCAACAATCTGGGCAGAACTTGGCAAACCAAACTCTACCGCAGAGTCAAGTTCAAACCCAACTTCTTAATCCCCCAAGTCGTGTACAAACAAACAATATTCTTCCACAGCAACACCCATCCATTCAAAATCATCAACTCCAAAGAAGTCTCTCTCAGAACCCTCCGTGGCAGCATCAACAGACTATATTGGGTCAGAATCAACAGCAAAAATTGATTCAATCCACTACGCCTGATCCTATTAATCAACAATTACAGATGTCTGATAATCAGGTTCGTCTTCAGTTATTACAGAAGCTTCAACAGCAACAACAAACACTCTTGGCACAGCAATCTGTATTGCAGCAGCCTGCCCAACATTTTCAAATCCAAGACCAGCAGAGGCAGCTTTTAGATGTAGCACACAACTCTAGGGCCCTAACTCCTGGTCAAGCACTGGAAATTCCTCCTACACTTCAAAACTCACTCCCCGAGGCTATTTCTATTACCAATCAGAGAACAACACCTAATAGCCCGAACAATATTCAATTCTCTCATCTATCCCAGCAACCAAAGCTTCAGCAACAGCAACCTGGCTTGTTGTCTGAAATGTCTGGTCATGTTGAACTTCCCCCTAAAACTACTACTAATCAGTTACCTGCTTCTGCTGGTTGTAGTATACTGACTGTAACAGCTGGAGCAGGGCAATCGGTAATCACTGATGATATTCCATCTTGTTCCACTTCACCTTCCACAAATAACTGTGCCAGTGCACTTCCCCCAGTTACAGGTTCCCGGATTCATTGGAGAACCACAATAGGGGATGATGTGGCTCAGTCTGCTGTCACGATCTTGAGTCCAAGTGCCTTAGAAACCATGTCATCTAATACAAACATGGTAAAAGATGCACAGCTGAAATATGAAGCCAAGCTTTCTTTAAACGTTTCAAAAAATCAGAATCAAGGAAATTTTTACCCTCAGACATACTTGAATGGTTGTGCTGTCCAGACAGATTATTTGGATACATCATCTTCTACGACTTCAGTTTGCCTTTCTCATAATGATACCCATTTGCATCAGATTAACAACCCATTATCTTATAATTCACAGTCAATATTTTGTAGAGACAACAGTCAAAATGTGGAGGTTCAGGCTGATGCTAGGAGCAATGTTCCATGTCACAATAACATTAATGGCCAAATGGAAATGCCACTTAATCTAGATTCCCTTCTAACCAAAGGCACAGTGGAGTTGGGGAAGGATTTGTCAAATAACTTCTCTTCAGGAGGCATGCTTGGGGACTATGAAAATAACACACATACTCAGCCAGAACTTCCATCTTCAATGGTTTCACAGACATTCGGAGTCCCTGATATGACCTTTAATTCAATTGATCCCACCACAAATAATAGTGGCTTCTTGAATAGGGATCCGTGGCTTCCAGCACCCCAACCCCCACCACGACATCAATTTCAGCGGATGAGAACATATACCAAGGTATATAAACGTGGAGCCGTGGGAAGGTCCATAGACATAACACGATATTCAGGTTATGAGGAGCTTAAACAGGATCTAGCCCGTAGGTTTGGTATTGAGGGACAGCTGGAGGATCGGCAAAGGATAGGCTGGAAACTTGTTTATGTAGATCATGAGAATGATGTTCTGCTAGTGGGAGATGACCCTTGGGAGGAGTTTGTTAACTGTGTCCGCTGCATTAAAATACTTTCTCCTCAAGAAGTTCAACAGATGAGCTTGGATGGAGATTTGGGCAATGGTGGCCATCCGAATCAAGATGGCAGCAGCTCTGATGGTGTGAATACTTAA 3339 0.4412 MKTQEEDGAATVAATNPRKVGGEKKSINPELWQACAGPLVNLPSPGTHVVYFPQGHSEQVAASLKKDVDVQTPNYPNLPSKLPCLLHNVTLHADPETDEVYAQMTLQPVPSFDTDALLRSDISLKSSKPQPEFFCKQLTASDTSTHGGFSVPRRAAEKIFPPLDYSVQPPAQELVARDLHDNVWRFRHVYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFIRDEKQQLLLGIRRANRQPTNLSSSVLSSDSMHIGILAAAAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKAVYSHQISPGMRFRMMFETEDPGTRRFVGTIIGVSDLDSVRWKNSQWRNLQVGWDESTAGERRSRVSIWEIEPVTAPFLICPSPFFRSKRPRPAGMPDDEPSDFTMPWLGDDMYIKDPQSLPGLSLAQWMNIQQNPALACSVQPNYVPSMSGSVLQNLPGSDIAHQLGFSTPQISQSNNAALNAQRILQTPQQLDHLQKLLSTSSALGTVIQSEQQLGDITQQSGQNLANQTLPQSQVQTQLLNPPSRVQTNNILPQQHPSIQNHQLQRSLSQNPPWQHQQTILGQNQQQKLIQSTTPDPINQQLQMSDNQVRLQLLQKLQQQQQTLLAQQSVLQQPAQHFQIQDQQRQLLDVAHNSRALTPGQALEIPPTLQNSLPEAISITNQRTTPNSPNNIQFSHLSQQPKLQQQQPGLLSEMSGHVELPPKTTTNQLPASAGCSILTVTAGAGQSVITDDIPSCSTSPSTNNCASALPPVTGSRIHWRTTIGDDVAQSAVTILSPSALETMSSNTNMVKDAQLKYEAKLSLNVSKNQNQGNFYPQTYLNGCAVQTDYLDTSSSTTSVCLSHNDTHLHQINNPLSYNSQSIFCRDNSQNVEVQADARSNVPCHNNINGQMEMPLNLDSLLTKGTVELGKDLSNNFSSGGMLGDYENNTHTQPELPSSMVSQTFGVPDMTFNSIDPTTNNSGFLNRDPWLPAPQPPPRHQFQRMRTYTKVYKRGAVGRSIDITRYSGYEELKQDLARRFGIEGQLEDRQRIGWKLVYVDHENDVLLVGDDPWEEFVNCVRCIKILSPQEVQQMSLDGDLGNGGHPNQDGSSSDGVNT* 1113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00396 1112 Pfam Auxin response factor 260 343 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Rops2g00396 1112 Pfam AUX/IAA family 998 1085 IPR033389 -
Rops2g00396 1112 Pfam B3 DNA binding domain 134 235 IPR003340 GO:0003677
Rops2g00396 1112 ProSiteProfiles PB1 domain profile. 1000 1084 IPR000270 GO:0005515
Rops2g00396 1112 Gene3D - 298 369 - -
Rops2g00396 1112 MobiDBLite consensus disorder prediction 1 24 - -
Rops2g00396 1112 FunFam Auxin response factor 132 236 - -
Rops2g00396 1112 SMART B3_2 134 236 IPR003340 GO:0003677
Rops2g00396 1112 CDD B3_DNA 133 225 IPR003340 GO:0003677
Rops2g00396 1112 Gene3D - 995 1089 - -
Rops2g00396 1112 FunFam Auxin response factor 995 1089 - -
Rops2g00396 1112 Gene3D - 132 235 IPR015300 -
Rops2g00396 1112 FunFam Auxin response factor 298 369 - -
Rops2g00396 1112 SUPERFAMILY DNA-binding pseudobarrel domain 124 263 IPR015300 -
Rops2g00396 1112 MobiDBLite consensus disorder prediction 556 584 - -
Rops2g00396 1112 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 24 1089 IPR044835 GO:0003677|GO:0006355|GO:0009725
Rops2g00396 1112 ProSiteProfiles B3 DNA-binding domain profile. 134 236 IPR003340 GO:0003677
Rops2g00396 1112 SUPERFAMILY CAD & PB1 domains 1013 1078 - -
Rops2g00396 1112 MobiDBLite consensus disorder prediction 1089 1112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00396 Rops-Chr2 5818706 5826025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00396 9 470 B3 DNA Binding Superfamily AT5G20730 66.806 0.0 603
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Rops2g00396 AUX_IAA 3e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00396 - - ccaj:109803454 1673.29