Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00394 ATGGAAGGTTATAACATAACACATAGGGAGAGGGGAGAAAATGGAATGATTATGGCGACGTGTTCTTCTTCGCCCCAAGAATTTCGCTCTCATGGTGGAAAAGGACTATTGGGAGTTGCTGCTGCTAGAAAGATGCACCAGAGAGAGAAGACTAATATGGCGGTAACTGGAAATGTTAAGAAAAAGCAAAAACGTAAATGTGTCCAGGATTTGTTTACAGCAGATTACATTGTGAACAATGTGTTACTGAAGGATGGTCCTCCTCTTGGTCAGGAATTTGATTCTCTTCCTTCTGGACCCAAAAATTACACTTCTGTGTGTCAAGAGGACCAAGGACCCACCAAAAAAAGGAAGGTTTCCAAGGGTGCAATTCAAAGTCACCCTGATTGTAATATGCAAGCACCGGTGAAGAAACATGGTATTGGCAAAGGTCTGATGACAGTTTGGAGGGCAACAAATCCTTATGCTGGAGGTCTTCCAATTGGTTTTGATTTTGCTGACCGAGAAGTTCATCTAATCTCTAATTCTAAAACACGGAAACCAGTCCGTGAGAACAACAGGTCATGGAAAACAGTAACCATGAATGGAATGCCAAAAAATAAAATGCAGAATAAGAAGAATAAATCACAGGATAAGAGGAAACTTTTCATGCAAAGAAGAGTGGGGGAATTGAACCAATATGTGACTCAGAACCAACCACCAAAGGAAAAATGTGAACTTGCTCTGGATAGTGCAACATCCAATGAGGGAGTTGATCAAATTTCAATGTTAATTGATGATGAAGAGCTAGAGCTGAGAGAGTTACGAGAAAGAACCAATCTGCTTATTTGTTCGGATCATTTTGCTTCCTATGGAATGCTTGGCTGCTCACTTTGTAAAGATGTGCTAGTTAAGTTCCCCCCAGATACTGTCAAGATGAAGAAGCCTATAAGTTTGCAACCTTGGGACTCCTCTCCAGAAATTGTGAAAAAATTATTCAAGGTTTTCCATTTCATTTATACGTATGCTATAGTTGTTGATATATGTCCCTTCACTCTTGATGAGTTTGTTCAAGCATTTCATGATAAGGACTCAATGTTACTTGGAAAGATTCATGTGGCCCTTTTCACACTTCTTCTATCTGACATTGAAGTGGAGCTTTCTAATGGGTTTTCACCCCATTTAAATAAGTCATGCAACTTTCTTGCATTGCTCCACTCGGTTGAAAGTCAAGAATATTCCCTTGACTTTTGGAGAAGATCTCTAAATCCTCTGACCTGGATTGAAACACTCCGTCAAGTGCTGGTTGCTTCTGGATTTGGTTCAAAGCAAAGTTCCTTACGAAGAGAGGTCCTTAGCAAGGAATTGAATCTTTTTGTAAACTTTGGACTACGCCCTGGAACCTTGAAGGGTGAGTTGTTTAAAATCTTGTCAGAACGAGGAAACAACGGATGCAAAGTATCTGACCTGGCAAAGTCAATGCAGATTGTTGAGTTAAATCTTGTCAGCACTACAGAGGAACTGGAGTCTTTAATATGTTCCACGCTTTCAAGTGATATTACTTTATTTGAAAAGATTTCATCATCTGCATATCGGCTGCGCATGAGCACTGTTACAAAGGACAATGATGAATTTCAGTCAGATATGGAGCACTCTGGGAGTGTTGATGATGAACTTAGTGACACTGATACTTGTAGCAGTGGTGATGATTCTGAAAGTGATTCGATAAACTCCAATATAAGAAAATTGAAGCGTGCAAACAGTCGTAAAATTAAAAATAATATGCTGAAACTATACACTGAAATTGATGAGAGCCATCCAGGAGAAGTGTGGTTGTTAGGACTGATGGAGAGTGAATATTCAGATTTGAACATTGAAGAAAAATTGAATGCATTGGTGGCTCTAACTGATCTTCTTTCATCTGGATCCAGCATCAGGATGAAGGATCAAATAAAAGTTACAGCTGATTGCAATTCTAGCATCCAATTACGTGGTTCCGGAGCAAAAATAAAGAGATCAGTAGTAAAGAATCCTGGGTCATTTTGGAACCAGATTGGACCAATGCAAGGTGTTAAAGAAGTGCACTTGAATTCTCAACATGGTCCTGTAGATTCCTCATCATTAATCTCAAAATTCCACAGTCATGAGGCATTCTTTGAGAAGAGAAAAGGTTCAACAGATTCACACCCCATTCAATCAGTGTTTTTGGGATCTGATCGTCGGTACAATAGATACTGGCTTTTCTTGGGCCCTTGTAATGCAGATGATCCTGGCCACAGGAGGGTTTACTTTGAATCTTCTGAAGATGGTCACTGGGAGGTGATCGATACTGAAGAGGCCTTGTGTGCCTTGTTGTCAGTTCTGGATGATAGAGGGAAAAGGGAGGCTCTTCTTATTGAATCTCTGGAGAGGCGACAAACATTTCTATGCAGATCTATGTCCAGGATTAAGGTTAATAGTAGTGGAATTGGGTGTATGTCAAATTCTGATCAATCTGAGCTGGATATGGTCACAGAAGACAGTTATTCTCCCATATCTGATGTAGACAACCTGAACCTGACTGAGACTGCTAAAGAATCTTTGCCATCAGCTGGGGCTGTGGTGATTGAAGCCGGAAAGAAAGGAGAGGAACAAGTGCAAAAGTGGATCCGTGTTCAAGAATATGATTCTTGGATTTGGAATTCTTTCTATTTAGATCTCAATGTTGTAAAATATGGTAGAAGGTCTTATCTTGACTCTCTAGCCAGATGTAAGAGTTGCCATGATCTATACTGGAGAGACGAGAGACACTGTAAAATTTGCCATATGACATTTGAGCTTGATTTTGATCTAGAAGAAAGATATGCAATCCACGTAGCCACATGCAGGGAGAAAGAAGACAGCAATACATTTCCAAATCATAAAGTCTTACCATCACAGATTCAATCACTGAAAGCTGCAATTTATGCTATTGAGTCTGTTATGCCCGGAGATGCCCTTGTCGGTGCTTGGAGGAAGTCTGCTCATAAACTATGGGTCAAACGGCTCAGGCGCACCTCAACTTTAGAGGAGCTCTTGCAGGTTCTTGCTGATTTTGTTGGTGCCATCAATGAAGACTGGTTGGTTCAATGCAAACTTCCAGATGGCGTGGTTGAAGAAATTATTGCATCTTTTGCAACTATGCCTCATACATCATCTGCCCTTGCTCTCTGGTTGGTGAAGTTAGATGCCGTAATTGCTCCCTACCTGGACACAGTCCATCCTCAGAGGAAGCAAGGAAGCGGTAAGCAGGGTCCTTGGTGA 3261 0.4082 MEGYNITHRERGENGMIMATCSSSPQEFRSHGGKGLLGVAAARKMHQREKTNMAVTGNVKKKQKRKCVQDLFTADYIVNNVLLKDGPPLGQEFDSLPSGPKNYTSVCQEDQGPTKKRKVSKGAIQSHPDCNMQAPVKKHGIGKGLMTVWRATNPYAGGLPIGFDFADREVHLISNSKTRKPVRENNRSWKTVTMNGMPKNKMQNKKNKSQDKRKLFMQRRVGELNQYVTQNQPPKEKCELALDSATSNEGVDQISMLIDDEELELRELRERTNLLICSDHFASYGMLGCSLCKDVLVKFPPDTVKMKKPISLQPWDSSPEIVKKLFKVFHFIYTYAIVVDICPFTLDEFVQAFHDKDSMLLGKIHVALFTLLLSDIEVELSNGFSPHLNKSCNFLALLHSVESQEYSLDFWRRSLNPLTWIETLRQVLVASGFGSKQSSLRREVLSKELNLFVNFGLRPGTLKGELFKILSERGNNGCKVSDLAKSMQIVELNLVSTTEELESLICSTLSSDITLFEKISSSAYRLRMSTVTKDNDEFQSDMEHSGSVDDELSDTDTCSSGDDSESDSINSNIRKLKRANSRKIKNNMLKLYTEIDESHPGEVWLLGLMESEYSDLNIEEKLNALVALTDLLSSGSSIRMKDQIKVTADCNSSIQLRGSGAKIKRSVVKNPGSFWNQIGPMQGVKEVHLNSQHGPVDSSSLISKFHSHEAFFEKRKGSTDSHPIQSVFLGSDRRYNRYWLFLGPCNADDPGHRRVYFESSEDGHWEVIDTEEALCALLSVLDDRGKREALLIESLERRQTFLCRSMSRIKVNSSGIGCMSNSDQSELDMVTEDSYSPISDVDNLNLTETAKESLPSAGAVVIEAGKKGEEQVQKWIRVQEYDSWIWNSFYLDLNVVKYGRRSYLDSLARCKSCHDLYWRDERHCKICHMTFELDFDLEERYAIHVATCREKEDSNTFPNHKVLPSQIQSLKAAIYAIESVMPGDALVGAWRKSAHKLWVKRLRRTSTLEELLQVLADFVGAINEDWLVQCKLPDGVVEEIIASFATMPHTSSALALWLVKLDAVIAPYLDTVHPQRKQGSGKQGPW* 1087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00394 1086 MobiDBLite consensus disorder prediction 192 211 - -
Rops2g00394 1086 PANTHER HOMEOBOX PROTEIN SIX 210 1076 - -
Rops2g00394 1086 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 600 639 IPR028942 -
Rops2g00394 1086 Pfam DDT domain 322 375 IPR018501 -
Rops2g00394 1086 Coils Coil 251 271 - -
Rops2g00394 1086 ProSiteProfiles DDT domain profile. 319 378 IPR018501 -
Rops2g00394 1086 MobiDBLite consensus disorder prediction 535 571 - -
Rops2g00394 1086 SMART testlast3 319 378 IPR018501 -
Rops2g00394 1086 MobiDBLite consensus disorder prediction 535 551 - -
Rops2g00394 1086 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 725 798 IPR028941 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00394 Rops-Chr2 5764086 5773110 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00394 216 1065 Homeobox Transcription Factor Family AT1G28420 26.223 1.26e-75 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Rops2g00394 WSD 2.8e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00394 - - gmx:100792062 1686