Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00393 ATGGCTATGTCACTACCATTTCAATTTCACTGTCACACTCTCCGGTCACCACCAAAATTCACGCTTCGCCGCGTGAACCACCGCACTTGCGTGGCGTGCAGTGTCAGCGGAGAGAATCCCCTGCTCCAAGTGAATGATCTGAGAGCTAAGATAGTGGAGTCAAATGTGGAGATTCTTCACGGTGTTAACCTCACTATCAACCGTGGAGAGATTCATGCCATCATGGGAAAAAATGGTTCTGGAAAGAGTACTTTTGCCAAGGTTCTGGTGGGGCATCCAGATTATGAAGTAACAGGAGGCAGTGTAATGTTCAAAGGAGAGAATCTTCTAGAGATGGAACCTGAGGAAAGGTCCCTAGCTGGTCTTTTCATGAGTTTTCAATCCCCTATTGAGATTCCTGGTGTTTCCAATGATGAGTTTCTTGTCATGGCCTACAATGCTCGAAGGAAAAAGCTTGGTCTCCCTGAGCTTGGTCCACTCGAGTGTTTTTCTTACCTGATGGAAAAACTTCAACTTGTTAACATGAAGCCTGACTTCCTCAATAGGAATGTTAATGAAGGATTTAGTGGTGGTGAACGCAAACGCAATGAAATTTTGCAGCTTGCGGTTTTGGGGGCAGACTTGGCTATTCTTGATGAAATTGATTCTGGATTGGATGTTGATGCGCTCAGGGATGTAGCTAATGCTGTCACTCGGATTCTCACCCCGGAGAATTCTCTATTGATGATAACTCATTATCGACGAATTCTTGATCTTTTGAATCCTACGCATGTCCATGTTATGGACAAAGGGAAAATTGCAAGGACAGGCGACATATCTATGGTTGAAGCTATTGAGGCAGATGGATATGAAACAGCCTCCACTTTAACTTAA 873 0.4433 MAMSLPFQFHCHTLRSPPKFTLRRVNHRTCVACSVSGENPLLQVNDLRAKIVESNVEILHGVNLTINRGEIHAIMGKNGSGKSTFAKVLVGHPDYEVTGGSVMFKGENLLEMEPEERSLAGLFMSFQSPIEIPGVSNDEFLVMAYNARRKKLGLPELGPLECFSYLMEKLQLVNMKPDFLNRNVNEGFSGGERKRNEILQLAVLGADLAILDEIDSGLDVDALRDVANAVTRILTPENSLLMITHYRRILDLLNPTHVHVMDKGKIARTGDISMVEAIEADGYETASTLT* 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00393 290 Pfam ABC transporter 59 213 IPR003439 GO:0005524
Rops2g00393 290 PANTHER ABC TRANSPORTER I FAMILY MEMBER 6, CHLOROPLASTIC 25 286 IPR010230 GO:0005524
Rops2g00393 290 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 40 273 IPR027417 -
Rops2g00393 290 SMART AAA_5 68 265 IPR003593 GO:0016887
Rops2g00393 290 NCBIfam Fe-S cluster assembly ATPase SufC 42 285 IPR010230 GO:0005524
Rops2g00393 290 ProSitePatterns ABC transporters family signature. 188 202 IPR017871 GO:0005524|GO:0016887
Rops2g00393 290 Gene3D - 41 288 IPR027417 -
Rops2g00393 290 CDD ABC_FeS_Assembly 42 283 IPR010230 GO:0005524
Rops2g00393 290 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 42 288 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00393 Rops-Chr2 5759665 5763843 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00393 55 282 Calmodulin-binding Proteins AT2G36910 24.066 3.12e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00393 K09013 - gmx:100811883 479.174