LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops2g00375	ATGAGGAGCCAAAAGGGTTGTTATGAAGAAGAGATGGGTTCCTCTGAGGTCACCGGGAAAGTGGTGGTGGTTGCAGTGAAAGCTTCCAAAGATATTTCAAGGACTGCTTTGGTTTGGGCTTTGACTCATGTTGTTCAACCAGGGGATTGCATTAAGCTATTGGTTGTCATTCCGGTTCTCTCCTCAAGCAAGAGGGTATGGGGCCTTTCAAGATTTACTACTGATTGTGCCACTAGTCATTGGAGGTCCTATTTAGGAACTGCTTCAGATCAGAAAGAAATCATTGCAAATTCCTGTTCTCAATTAGTGCTTCAACTCCATGATTTTTATGATCCAGAGAAGATAAAGATCAGAGTAAAGATTCTTTCTGGTTCTTTATGTGGAGCAGTGGCTGCTGAAGCCAAAAGAGTCCAGTCAAGCTGGGTTATATTGGACAAAAAATTGAAACATGAAAAGAAGTACTGCATGGAGCAGCTGCATTGCAATATTGTTATTATGAAGCAGTCCCGGGCAAAGATTCTACGCTTGAATTTGAATGGTTCACCAAAGATGGAACTCAAGAGGGATTGTCCATTGTCACTGGAGCCGAATGAATATACAAGAAACTTGAAAGACAACTATGAACATCCAGAAATAATTAGAGGTCCAGCTGTTACTCCTGCTAGTAGTCCAGAGCAAGGGTCACCACCATTGACTGCAACTGATATTGGAACATCATCGATGTCAAGCTCAGATCCTGGGACTTCACCATTTTTCCACTCTTATAATTATGAAAGACGAAGGAGAGGTTTTCCCTTTGTTCATGAGGGACTGACAAACTTGGAGGATATTGAATCTGACTCAGAGAGTGAAAAGCTAAGTATATCATCCAAAAGTTCATATTTTCAGCCATGGATTGCAAATGTAATTTGTGTAGATGGTGAGTTCTCAAAACATGAGGACTACATTCAAAGATCTAGTGATAAGGCTTTGGTTTCTACCTATGAAGCTTTGCTTCAGAAGTTCTCAAAGTTGGATCAAGATCCTATCTTGGGAGTTCTTAATTGTAAAATTGATGTGAACCTAAGCAGAAGTGTTAGAGAAGCAATTTCACTAGCCAAAAGTGCAACTGCTGGACCTCCCCCATTGTGCTCCATTTGTCAGCACAAGACACCTGTATTTGGGAATCCTCCAAGGTGGTTTACATTTGCTGAATTGCAACTTGCCACAGGTGGTTTTTCACAAGCAAACTTCTTGGCTGAAGGTGGTTTTGGTTCTGTACACCGTGGTGTCCTACCTGATCGGCAGGTCATTGCTGTGAAGCAGCATAAATTAGCCAGTACTCAAGGAGATAAAGAATTTTGCTCAGAAGTAGAGGTCTTAAGTTGTGCTCAACATCGTAATGTTGTGATGCTAATTGGGTTTTGTGTGGAGGATGGAAGAAGATTGCTGGTTTATGAATACATCTGCAATGGGTCTTTGGATTCTTATCTCTATGGAAGAAAGCAGAATGTGCTGGAATGGTCTGCACGGCAAAAAATTGCAGTTGGAGCAGCTCGTGGTTTGAGATACCTTCATGAAGAATGTAGAGTGGGTTGCATTGTGCACCGTGATATGCGGCCTAACAATATCCTCCTCACTCATGATTTTGAAGCATTAGTGGGAGATTTTGGACTTGCTAGGTGGCAGCCAGATGGAGATATGGGTGTGGAAACCAGGGTGATAGGAACATTTGGGTATTTGGCACCAGAATATGCTCAAAGTGGTCAAATTACTGAAAAAGCTGATGTGTACTCATTTGGGATAGTACTATTGGAGCTTGTGACTGGAAGGAAAGCTATTGATATAAATCGGCCCAAGGGCCAGCAATGCCTCAGTGAATGGGCACGCCCCTTGCTTGAAGAACATGCCACTCATAAACTAGTAGATCCGAGCATAAGGAACTGCTATGATGAACAAGAGGTTTATCGCATGCTGCAGTGTTCCTCTTTGTGCATCCAACGGGATCCTCAATTAAGGCCTCGAATGTCTCAGGTGCTCAAGATACTGGAAGGTGACATTCTCATGTGA	2049	0.4251	MRSQKGCYEEEMGSSEVTGKVVVVAVKASKDISRTALVWALTHVVQPGDCIKLLVVIPVLSSSKRVWGLSRFTTDCATSHWRSYLGTASDQKEIIANSCSQLVLQLHDFYDPEKIKIRVKILSGSLCGAVAAEAKRVQSSWVILDKKLKHEKKYCMEQLHCNIVIMKQSRAKILRLNLNGSPKMELKRDCPLSLEPNEYTRNLKDNYEHPEIIRGPAVTPASSPEQGSPPLTATDIGTSSMSSSDPGTSPFFHSYNYERRRRGFPFVHEGLTNLEDIESDSESEKLSISSKSSYFQPWIANVICVDGEFSKHEDYIQRSSDKALVSTYEALLQKFSKLDQDPILGVLNCKIDVNLSRSVREAISLAKSATAGPPPLCSICQHKTPVFGNPPRWFTFAELQLATGGFSQANFLAEGGFGSVHRGVLPDRQVIAVKQHKLASTQGDKEFCSEVEVLSCAQHRNVVMLIGFCVEDGRRLLVYEYICNGSLDSYLYGRKQNVLEWSARQKIAVGAARGLRYLHEECRVGCIVHRDMRPNNILLTHDFEALVGDFGLARWQPDGDMGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGIVLLELVTGRKAIDINRPKGQQCLSEWARPLLEEHATHKLVDPSIRNCYDEQEVYRMLQCSSLCIQRDPQLRPRMSQVLKILEGDILM*	683

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Rops2g00375	682	Gene3D	Transferase(Phosphotransferase) domain 1	482	680	-	-
Rops2g00375	682	SUPERFAMILY	Protein kinase-like (PK-like)	385	676	IPR011009	-
Rops2g00375	682	FunFam	Adenine nucleotide alpha hydrolase-like domain kinase	482	682	-	-
Rops2g00375	682	CDD	STKc_IRAK	412	678	-	-
Rops2g00375	682	Pfam	Protein tyrosine and serine/threonine kinase	410	675	IPR001245	GO:0004672\|GO:0006468
Rops2g00375	682	ProSitePatterns	Tyrosine protein kinases specific active-site signature.	527	539	IPR008266	GO:0004672\|GO:0006468
Rops2g00375	682	MobiDBLite	consensus disorder prediction	214	247	-	-
Rops2g00375	682	MobiDBLite	consensus disorder prediction	221	247	-	-
Rops2g00375	682	FunFam	Adenine nucleotide alpha hydrolase-like domain kinase	378	481	-	-
Rops2g00375	682	Gene3D	Phosphorylase Kinase; domain 1	378	481	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops2g00375	Rops-Chr2	5543046	5547678	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops2g00375	356	672	Trihelix Transcription Factor Family	AT1G68690	48.598	1.07e-97	313

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_PERK-2	Rops2g00375		PK_Tyr_Ser-Thr	1.5e-43	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops2g00375	-		-	aprc:113855006	1221.84

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