Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00354 ATGATGCTAGGGGAGCCCCACCGTGCGAATCCAACTGTACACGTGCCTCCGTGGCCGATGGTCAATGATACCACGCCGGAGATCTTTTCGCCTTTAACGGCCAATGGTGATTACTCTCCGTACTACTTGCAAGACGCACTGACTGCACTTCAACAATATGTTCCTTCCAACGATGTTGATGCCGATTCTGACTCGGACGTTCCGAGTCGTGAATCGGTGGATGCTTACTCGTGCGACCATTTCCGCATGTTTGAGTTTAAGATTCGGAGATGCGCACGTGGCAGGTCACATGACTGGACGGAGTGTCCTTATGCTCATCCCGGTGAGAAGGCTCGTCGCCGTGACCCCAGGAAGTATCACTATTCCGGCACGGCGTGTCCTGATTTTCGTAAGGGGAATTGTAAGAAAGGGGATGCTTGTGAGTTTGCGCATGGGGTGTTTGAGTGTTGGCTCCACCCTGCGCGCTACAGGACTCAGCCGTGTAAGGATGGTACCAGTTGTCGGCGGCGGGTGTGTTTCTTTGCTCACACGCCGGAGCAACTTAGGGTTTTGCCGCAGCAGAGTCCCCGGAGTGCTAACTCCGCTGATTCTTATGATGGGTCTCCTCTAAGGCTCGCTATTGAGTCTTCTTGTGTGAAGACGCTTCCGTTTATTTCTTCTCCTGGTTCGGTTTCCCCGCCGGTGACTCCTCCGGTGGAGTCTCCTCCGATGTCTCCGATGACTCGGTCGCTGAGCCGGTCTTTGGGCTCGAGTTCTGTTAATGTTAATGAAATGGTGGCTTCTCTGCGTAATTTGCAACTGGGTAAGGTGAAGTCTTTACCCTCTTCATGGAATGTTCAAATGGGTTCTCCAGGATTCGGGTCTCCTCGGGGACCCGTGATCCGACCCGGATTCTGTAGCCTCCCCTCGACCCCTACACAGGAACCGGGTCGTGGTGGTGCCAACTATTTTGATCTTTGGGATCAGAGCTGTGATGAGGAGCCTGTAATGGAGAGGGTGGAATCTGGGAGGGGCATAAGGGCGAAGATGTTTGAGAAATTGAGCAAAGAGAACTCTCTGGGTAGATCGGGTTCGGGTCAAGTGGGTGGAGCTCCAGTTGTTGGATTGGTTTCAGAGCTTGTGAGTCCCTTCTTGGGATGA 1140 0.5333 MMLGEPHRANPTVHVPPWPMVNDTTPEIFSPLTANGDYSPYYLQDALTALQQYVPSNDVDADSDSDVPSRESVDAYSCDHFRMFEFKIRRCARGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGNCKKGDACEFAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRVLPQQSPRSANSADSYDGSPLRLAIESSCVKTLPFISSPGSVSPPVTPPVESPPMSPMTRSLSRSLGSSSVNVNEMVASLRNLQLGKVKSLPSSWNVQMGSPGFGSPRGPVIRPGFCSLPSTPTQEPGRGGANYFDLWDQSCDEEPVMERVESGRGIRAKMFEKLSKENSLGRSGSGQVGGAPVVGLVSELVSPFLG* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00354 379 FunFam Zinc finger CCCH domain-containing protein 66 78 146 - -
Rops2g00354 379 PANTHER UNKEMPT FAMILY MEMBER 46 374 IPR045234 -
Rops2g00354 379 MobiDBLite consensus disorder prediction 222 247 - -
Rops2g00354 379 ProSiteProfiles Zinc finger C3H1-type profile. 121 147 IPR000571 GO:0046872
Rops2g00354 379 Gene3D - 120 184 - -
Rops2g00354 379 SMART c3hfinal6 120 146 IPR000571 GO:0046872
Rops2g00354 379 SMART c3hfinal6 155 178 IPR000571 GO:0046872
Rops2g00354 379 MobiDBLite consensus disorder prediction 223 237 - -
Rops2g00354 379 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 125 145 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00354 Rops-Chr2 5321812 5322951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00354 76 272 C2H2 Transcription Factor Family AT5G12850 50.244 1.98e-58 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Rops2g00354 zf-CCCH 3.8e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00354 - - aprc:113867365 606.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00354 2 5321812 5322951 Rops2g00354 2 5321812 5322951 ECH