Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00347 ATGAATAATAAGATCAGCAGCAACTTGAGTTCTGTTACCAACTCTGATCTCATAGATGCAAAGCTCGAAGAGCATCAATTATGTGGATCCAAACAGTGCCCCGGTTGTGGGCACAAGTTTGAAGGGAAGCCGGATTGGCTAGGTCTACCAGCAGGAGTGAAGTTTGATCCAACAGACCAAGAACTCATAGAACATCTTGAAGCTAAAGTGGAGGCTAAGAGTATGAAATATTCACACCCTTTGATAGATGAGTTCATTCTTACTATTGAAGGAGAAGATGGGATTTGTTATACCCATCCTGAGAAACTTCCAGGAGTAACAAGAGATGGGTTAAACAGACACTTCTTTCATAGACCTTCAAAGGCTTATACAACAGGGACACGAAAGAGGAGAAAGATTCAAAACGAATGTGACTTGCAAGGAGGAGAAACCCGATGGCACAAGACTGGTAAGACCAGACCAGTGATGGTGAATGGAAAACAAAAGGGGTGCAAGAAAATTCTAGTCCTCTATACAAATTTCGGGAAGAATAGAAAACCTGAGAAGACCAACTGGGTGATGCACCAATACCATTTGGGTCAGCATGAAGAAGAGAGAGAAGGAGAGCTTGTGGTGTCAAAGATATTTTATCAGACACAGCCAAGGCAATGCAATTGGTCTGATAGAAGTGCAACAACTGGTGAAGGAAGTGGAGAACCTAACAATGGCAGAAGAGATAGTGGGAGTGGCAGTTCTTCTTCTAAGGAAATAGTTACTCACAGAGATGAGATGTCTGCTGTTGTTGGGGTCCCTCCATTAACAACCTTCACCACTGCCTTAGATATTCAACAACACCTAAAATCTGACCATTTCAGCTTCATCCCATTCAGGAAAACCTTCGATGAGGTTGGAATAGGAGAAGCTTCCACAGCAAGAGAAGTGCAAGCATCAGGGTCGTGTGAAGAAGTGCATCAACAACAGCATGCGCACCAGCAGATTGCAACCACAGCATTTCATATCAGTAGGCCTTCGCATCCCATCTCCACCATCATCTCTCCACCTCCTTTTCATCACACATCTATCATCCTAGACGACAACCCTTACCATGTCTCTAGAATGCTCCAAAATGAAAATTTCCAGCAACAACATCATAAACTTGGAGGAAGGTCTGCGTCTGGTTTGGAGGAACTCATTATGGGGTGCACTTCCACTGATATCAAAGAGCAGGAGTCATCCATTACAAACCCACAAGAAGCTGAATGGTTGAAATACTCTTCTTATTGGCCAGACCCTGACAACCCAAACCATCATGAGTAG 1296 0.4367 MNNKISSNLSSVTNSDLIDAKLEEHQLCGSKQCPGCGHKFEGKPDWLGLPAGVKFDPTDQELIEHLEAKVEAKSMKYSHPLIDEFILTIEGEDGICYTHPEKLPGVTRDGLNRHFFHRPSKAYTTGTRKRRKIQNECDLQGGETRWHKTGKTRPVMVNGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGQHEEEREGELVVSKIFYQTQPRQCNWSDRSATTGEGSGEPNNGRRDSGSGSSSSKEIVTHRDEMSAVVGVPPLTTFTTALDIQQHLKSDHFSFIPFRKTFDEVGIGEASTAREVQASGSCEEVHQQQHAHQQIATTAFHISRPSHPISTIISPPPFHHTSIILDDNPYHVSRMLQNENFQQQHHKLGGRSASGLEELIMGCTSTDIKEQESSITNPQEAEWLKYSSYWPDPDNPNHHE* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00347 431 SUPERFAMILY NAC domain 45 211 IPR036093 GO:0003677|GO:0006355
Rops2g00347 431 MobiDBLite consensus disorder prediction 218 255 - -
Rops2g00347 431 FunFam NAC domain-containing protein 73 58 215 - -
Rops2g00347 431 MobiDBLite consensus disorder prediction 218 248 - -
Rops2g00347 431 Gene3D NAC domain 58 215 IPR036093 GO:0003677|GO:0006355
Rops2g00347 431 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 7 321 IPR044799 GO:0003700
Rops2g00347 431 Pfam No apical meristem (NAM) protein 50 192 IPR003441 GO:0003677|GO:0006355
Rops2g00347 431 ProSiteProfiles NAC domain profile. 49 211 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00347 Rops-Chr2 5149716 5155505 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00347 16 421 NAC Transcription Factor Family AT5G56620 54.299 1.04e-136 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops2g00347 NAM 1.5e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00347 - - gmx:100791884 736.873
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00347 2 5149716 5155505 Rops2g00347 2 5149716 5155505 ECH