Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00345 ATGGAGAAGAGCTGGATTCTGACTTTTCTCCTCCTCCTCCTCCTCTCAAGTGCAGCAAAAGTTGCCATAGGTGTTGGTCTCGGTGTTGGAATTGGTGTAGGTGTTGGTGTTGGTATTGGCAATGGTGGTAGTGGTGGCAGTGTTAACAGCCCAGGGCCTTCTGGATCTTCAGTGCCAAAACTGAACAATGCTTACACAGCTCTCCAGGCATGGAAATCAGCAATTACCGATGATCCACTGAAGATTTTAGATAGTTGGGTTGGTTCTAATGTGTGTTCTTATAAAGGGGTCTTTTGTGCAAATGGTAAGGATGAAATGGCTGTATCAGCTGCAACTGGGACTATTGTTGCAGGAATAGATCTCAACCATGCAAATCTCAAAGGAACTCTTGTCAAAGAGCTCTCTTTGTTATCTGATATCACTCTTCTCCACCTCAACAGTAATCAATTTTCTGGTACAGTTCCTGATACATTCTCAGACCTCACCTCTCTGGAAGAGTTAGACATCAGTAACAACCAATTTTCAGGTCCTTTTCCCACAGTTACTTTAAATATGCCAAGCCTCGTTTACTTGGACCTCAGATTCAACTCCTTCTCAGGACCCCTCCCTGAACAACTTTTCAATAAGAAGCTGGATGCAATATTTCTCAACAACAATCAATTTGGAGGTGAAATTCCACAAAATTTGGGAAATTCTCCTGCCTCAGTGATTAATTTAGCCAACAACAAGTTGAGTGGAAACATCCCAATAAGTTTTGGCTTCATGAGTTCAAAACTAAAGGAGATTCTCTTCCTCAATAACCAATTAACAGGTTGCATTCCTGAAGGAGTGGGGATCTTCACAGAGATTCAAGTTCTTGATGTGAGCTTCAATTCACTCATGGGTCATTTGCCAGACACAGTATCTTGCTTGCAAGATATAGAGGTTCTCAATTTGGCACATAACAAGCTTTCTGGGGAATTATCAGATGTGATCTGCTCTTTGAGAAGCCTAATGAATCTAACTGTTGCCTACAATTTCTTTTCTGGGCTAAGCCAGGAATGTTCAAGGCTTTTCAATGTGGGGTTTGATTTCTCAGATAATTGCATTCCTGGGAGGGACATGCAAAGACCTCCACCAGAGTGCTCTGTGATCCCAGGTGGTAGCCTCAATTGTCTAAGAATCCCTACTCCAAAACCTCTTGTTTGTGGTACACTGGCTGCAAGTCTTTCTAAGCACACAAATCTCCCTTCACCATCTCCCTGA 1245 0.4265 MEKSWILTFLLLLLLSSAAKVAIGVGLGVGIGVGVGVGIGNGGSGGSVNSPGPSGSSVPKLNNAYTALQAWKSAITDDPLKILDSWVGSNVCSYKGVFCANGKDEMAVSAATGTIVAGIDLNHANLKGTLVKELSLLSDITLLHLNSNQFSGTVPDTFSDLTSLEELDISNNQFSGPFPTVTLNMPSLVYLDLRFNSFSGPLPEQLFNKKLDAIFLNNNQFGGEIPQNLGNSPASVINLANNKLSGNIPISFGFMSSKLKEILFLNNQLTGCIPEGVGIFTEIQVLDVSFNSLMGHLPDTVSCLQDIEVLNLAHNKLSGELSDVICSLRSLMNLTVAYNFFSGLSQECSRLFNVGFDFSDNCIPGRDMQRPPPECSVIPGGSLNCLRIPTPKPLVCGTLAASLSKHTNLPSPSP* 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00345 414 FunFam Leucine-rich repeat extensin-like protein 1 65 231 - -
Rops2g00345 414 SUPERFAMILY L domain-like 64 353 - -
Rops2g00345 414 Gene3D Ribonuclease Inhibitor 234 353 IPR032675 -
Rops2g00345 414 Gene3D Ribonuclease Inhibitor 62 233 IPR032675 -
Rops2g00345 414 Pfam Leucine rich repeat N-terminal domain 62 99 IPR013210 -
Rops2g00345 414 Pfam Leucine rich repeat 141 197 IPR001611 GO:0005515
Rops2g00345 414 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 52 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00345 Rops-Chr2 5113522 5115077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00345 59 387 Leucine-rich Repeat extension Gene Families AT3G24480 50.448 8.28e-108 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00345 - - gmx:100786358 621.313
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00345 2 5113522 5115077 Rops2g00345 2 5113522 5115077 ECH