Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00342 ATGGAGGTAAAGGGACGGTGGAGCGGGCATCATCCCTCACCCCATGATCCCAACCCTTATTTAAAACTAAATTTGAAGCTCACACAAAATCAAACACAACACAACACAAACACACCAAGCACTAGAAAACAAAACACAAAAATGTCGTGGCAAACCTACGTCGATGACCACTTGATGTGTGATATTGATGGCACAGGCCACCACCTCTCCGCCGCCGCCATCGTCGGCCATGATGGCTCCATCTGGGCTCAGAGCTCTTCCTTCCCTCAGCTTAAGCCTCAGGAGATCACTGATATCATGAAAGATTTCGACGAACCAGGTCATCTTGCTCCTACAGGCTTGCACCTTGGAGGAACCAAATACATGGTTATCCAGGGAGAGTCTGGAGCTGTCATCCGCGGGAAGAAGGGATCTGGAGGCGTCACCATAAAGAAAACTGGTCAAGCTCTAGTTTTTGGAGTTTATGAGGAACCTGTGACTCCTGGACAATGCAACATGGTTGTTGAGAGGTTGGGAGATTACCTCATTGATCAGGGTCTGTAG 543 0.4862 MEVKGRWSGHHPSPHDPNPYLKLNLKLTQNQTQHNTNTPSTRKQNTKMSWQTYVDDHLMCDIDGTGHHLSAAAIVGHDGSIWAQSSSFPQLKPQEITDIMKDFDEPGHLAPTGLHLGGTKYMVIQGESGAVIRGKKGSGGVTIKKTGQALVFGVYEEPVTPGQCNMVVERLGDYLIDQGL* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00342 180 SMART prof_2 48 180 IPR005455 GO:0003779
Rops2g00342 180 MobiDBLite consensus disorder prediction 1 21 - -
Rops2g00342 180 SUPERFAMILY Profilin (actin-binding protein) 49 179 IPR036140 -
Rops2g00342 180 FunFam Profilin 48 180 - -
Rops2g00342 180 Pfam Profilin 48 179 IPR005455 GO:0003779
Rops2g00342 180 CDD PROF 49 179 IPR005455 GO:0003779
Rops2g00342 180 PRINTS Profilin signature 70 79 IPR005455 GO:0003779
Rops2g00342 180 PRINTS Profilin signature 89 109 IPR005455 GO:0003779
Rops2g00342 180 PRINTS Profilin signature 113 127 IPR005455 GO:0003779
Rops2g00342 180 PRINTS Profilin signature 50 59 IPR005455 GO:0003779
Rops2g00342 180 PRINTS Profilin signature 162 179 IPR005455 GO:0003779
Rops2g00342 180 PRINTS Profilin signature 149 162 IPR005455 GO:0003779
Rops2g00342 180 Gene3D Dynein light chain 2a, cytoplasmic 46 180 - -
Rops2g00342 180 PRINTS Plant profilin signature 120 129 IPR005455 GO:0003779
Rops2g00342 180 PRINTS Plant profilin signature 133 148 IPR005455 GO:0003779
Rops2g00342 180 PRINTS Plant profilin signature 166 179 IPR005455 GO:0003779
Rops2g00342 180 PRINTS Plant profilin signature 48 61 IPR005455 GO:0003779
Rops2g00342 180 PRINTS Plant profilin signature 101 115 IPR005455 GO:0003779
Rops2g00342 180 PRINTS Plant profilin signature 153 166 IPR005455 GO:0003779
Rops2g00342 180 PRINTS Plant profilin signature 76 89 IPR005455 GO:0003779
Rops2g00342 180 PANTHER PROFILIN 48 179 IPR005455 GO:0003779
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00342 Rops-Chr2 5086292 5088057 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00342 48 180 Cytoskeleton Gene Families AT4G29340 82.090 1.63e-82 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00342 K05759 - gmx:100784770 270.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00342 2 5086292 5088057 Rops2g00342 2 5086292 5088057 ECH