Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00339 ATGTCAAATCTGCATTCCATTTTCTATATCTTAGTACTTCTTCTTCTTCTTCAAAATCCCAATGCAGCACAATGTCATACCAAGGGAATTAGACCAGGGCATTCTTCAGGGAATTGGCCACCGGTTAATATGACCCGAGTTCAATTTTCAGAACAACAGTTCATGAAATGGGTGAAATTTGTAGGTGGTCTCAAACACTCTGTCTTTAGGACAGCAAAAAATAAGCTTTTCCCTTCTTACACTTTGCACGTTTCTAAGCAGCACGGTAAAGGAGGTTTTTCATCGATTCAAGCAGCCATTGATTCCCTTCCATTCATCAATCTAGTGAGAGTGGTGATTAAGGTCCATGCAGGGGTTTACACGGAGAAAGTTAACATTCCTCCTTTGAAATCCTTCATAACCATACAAGGAGCAGGTGCAGATAAAACCATTATTCAATGGGGTGACACTGCTCAAACTCGTGGGCCAAATGGCCAGCCATTGGGAACCTATGGCTCTGCAACTTTTGCAGTGAATTCAGCTTATTTCATTGCCAAGAACATCACATTCAAGAACACTGCCCCAGTTCCAGCACCAGGAGCAGTTGGAAAGCAAGCAGTGGCGTTAAGAATTTCAGCAGATACAGCAGTATTCCTAGGCTGCAAATTCTTAGGAGCACAAGACACACTCTATGATCATGTGGGTAGGCATTACTACAAGGATTGTTATATTGAAGGCTCTGTTGATTTCATATTTGGCAATGCTCTCTCTCTGTTTGAGGGGTGTCACGTGCATGCCATATCACAAAATATAGGGGCCTTGACAGCCCAAGGAAGGAGCAGTCTATTAGAAGACACGGGTTTCTCGTTTGTTCACTGTAAGGTCACGGGCTCAGGAGCACTATACCTTGGAAGGGCTTGGGGTCCTTTCTCTCGAGTTGTTTTTGCTTACACTTACATGGACAATATCATCATTCCCAAAGGATGGTATAATTGGGGTGATCCCAACCGTGAAATGACTGTATTCTATGGACAATACAAATGCACAGGACCAGGAGCAAACTTTGCCGGGAGAGTATCATGGTCAAGGGAGCTCACTGATGAGGAAGCCAAACCATTTATTTCACTTAGCTATATTGATGGGTCTGAATGGATCAATTCATTTTTTTGA 1149 0.4299 MSNLHSIFYILVLLLLLQNPNAAQCHTKGIRPGHSSGNWPPVNMTRVQFSEQQFMKWVKFVGGLKHSVFRTAKNKLFPSYTLHVSKQHGKGGFSSIQAAIDSLPFINLVRVVIKVHAGVYTEKVNIPPLKSFITIQGAGADKTIIQWGDTAQTRGPNGQPLGTYGSATFAVNSAYFIAKNITFKNTAPVPAPGAVGKQAVALRISADTAVFLGCKFLGAQDTLYDHVGRHYYKDCYIEGSVDFIFGNALSLFEGCHVHAISQNIGALTAQGRSSLLEDTGFSFVHCKVTGSGALYLGRAWGPFSRVVFAYTYMDNIIIPKGWYNWGDPNREMTVFYGQYKCTGPGANFAGRVSWSRELTDEEAKPFISLSYIDGSEWINSFF* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00339 382 ProSitePatterns Pectinesterase signature 2. 237 246 IPR033131 -
Rops2g00339 382 Gene3D - 80 381 IPR012334 -
Rops2g00339 382 FunFam Pectinesterase 78 380 - -
Rops2g00339 382 SUPERFAMILY Pectin lyase-like 77 380 IPR011050 -
Rops2g00339 382 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 75 379 - -
Rops2g00339 382 Pfam Pectinesterase 86 374 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00339 Rops-Chr2 5025463 5028574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00339 88 378 Carbohydrate Esterase AT5G47500 51.027 8.58e-104 309
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00339 K01051 - gmx:100793773 691.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00339 2 5025463 5028574 Rops2g00339 2 5025463 5028574 ECH