Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00321 ATGGGTCAGGAGCTACCTAGCTCAGAGACTGAGACAAGTACTAATTGTTCTTCAATCACTAGTACCACCACTCCTAAGCTTTTATTGTCGGAGCCCCGTTTACCCTACCCAGATGAGAAAAAGCCCAAACGGGCCAGGGATAGTAACAGCAAGCACCCGGTTTACAGAGGAGTCCGAATGCGGGCATGGGGCAAATGGGTATCCGAAATCCGAGAGCCCAGAAAGAAAAACCGGATCTGGCTCGGCACCTTCGCCACCCCGGAGATGGCGGCGCGTGCTCATGACGTGGCTGCGCTTGCTATAAAAGGGAACTCCACCATCCTTAACTTCCCCGAACTCGCGCGTTCAATGCCCCGACCCGAATCTAATTCGCCCCGAGATGTTCAAGCCGCGGCAGCCAAAGCTGCTGCCATGGAGGTTTTCGATCACCAAACGACGTCGCAATCGTCTACCTCTTCTTCGTCATCATCGTCGCTGTCGCAGTCTTGGTCTTCTTCATCGTTGGCGGTTTCCTCCTCCGGTGACCCGGGGGAACTGGATGAAATAGTAGAGCTGCCACCATTGGGTCCGAGTTTCGAATTACCCGACCCGAGTAATGAGTTAGTGTTTTCGGACCCGGTTGATGGGTGGGCCTATTGTCACCCTTGGTATCACAGCATCTATGATGAGGGGTCTTGTGGGGGATATTTTATTGGGGATCAGATTTCAATGCAAGACTCTACTGAGATTGAGAGGGTGATTCCTTGTGGCTTTGAGGGTTCTTTGTGGCAGCATTAA 777 0.5251 MGQELPSSETETSTNCSSITSTTTPKLLLSEPRLPYPDEKKPKRARDSNSKHPVYRGVRMRAWGKWVSEIREPRKKNRIWLGTFATPEMAARAHDVAALAIKGNSTILNFPELARSMPRPESNSPRDVQAAAAKAAAMEVFDHQTTSQSSTSSSSSSSLSQSWSSSSLAVSSSGDPGELDEIVELPPLGPSFELPDPSNELVFSDPVDGWAYCHPWYHSIYDEGSCGGYFIGDQISMQDSTEIERVIPCGFEGSLWQH* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00321 258 Pfam AP2 domain 53 103 IPR001471 GO:0003700|GO:0006355
Rops2g00321 258 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 31 188 - -
Rops2g00321 258 Gene3D AP2/ERF domain 54 112 IPR036955 GO:0003700|GO:0006355
Rops2g00321 258 FunFam Ethylene-responsive transcription factor 2 53 112 - -
Rops2g00321 258 MobiDBLite consensus disorder prediction 1 53 - -
Rops2g00321 258 MobiDBLite consensus disorder prediction 115 190 - -
Rops2g00321 258 SMART rav1_2 54 117 IPR001471 GO:0003700|GO:0006355
Rops2g00321 258 SUPERFAMILY DNA-binding domain 54 112 IPR016177 GO:0003677
Rops2g00321 258 PRINTS Ethylene responsive element binding protein signature 77 93 IPR001471 GO:0003700|GO:0006355
Rops2g00321 258 PRINTS Ethylene responsive element binding protein signature 55 66 IPR001471 GO:0003700|GO:0006355
Rops2g00321 258 MobiDBLite consensus disorder prediction 33 53 - -
Rops2g00321 258 CDD AP2 55 113 IPR001471 GO:0003700|GO:0006355
Rops2g00321 258 ProSiteProfiles AP2/ERF domain profile. 54 111 IPR001471 GO:0003700|GO:0006355
Rops2g00321 258 MobiDBLite consensus disorder prediction 1 28 - -
Rops2g00321 258 MobiDBLite consensus disorder prediction 141 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00321 Rops-Chr2 4830248 4831609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00321 39 227 AP2-EREBP Transcription Factor Family AT5G11590 61.257 2.64e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops2g00321 AP2 5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00321 K09286 - gmx:100778201 291.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00321 2 4830248 4831609 Rops2g00321 2 4830248 4831609 ECH
Rops2g00321 2 4830248 4831609 Rops5g00118 5 1978237 1979411 PCT