Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00308 ATGGAACGCATCGTGGGCGGCAAATACAAGCTCGGCCGCAAGATCGGAAGCGGATCCTTCGGTGAAATTTACCTCGCGACGCATATTGATACCTTCGAGATCGTCGCCGTCAAGATCGAGAACAGTAAAACAAAGCATCCGCAACTGCTTTATGAGGCAAAGCTCTACAATATTCTTCAAGGAGGAAGTGGCATTCCAAGCATAAAATGGTCTGGCATAGACGGGGAGGATAATGTGCTTGTTCTTGATTTGCTGGGACCGAGTCTTGAGGATCTTTTTGTGTATTGTGGAAGGAAGTTTTCATTGAAGACTGTGTTAATGTTAGCTGATCAAATGATCACCAGAATAGAATATGTGCATTCCAAAGGATTTTTGCATAGGGACATTAAACCTGATAACTTTCTCATGGGACTTGGTCGGAAGGCCAATCAGGTTTACATAATTGATTTTGGGCTGGCGAAACGATATCGAGACTCCACAACCAATCGCCACATCCCTTACAGAGAGAACAAAAACTTGACGGGGACTGCACGTTATGCAAGTTGCAATACTCATCTTGGGATTGAGCAAAGTAGACGGGATGATTTGGAATCACTAGGATATGTACTTCTGTACTTCCTCAGGGGAAGCCTTCCTTGGCAAGGTCTAAAGGCTGCAACTAAGAAACAAAAGTACGATAAAATATGTCAGAAGAAATTATCAACTCCTATTGAGGTGCTATGCAAATCTCATCCTGTAGAGTTTGCCTCATACTTCCATTACTGCCACTCGTTGACATTTGATCAGCGACCTGATTATGGATTCTTGAAGCGCCTATTTCGGGACCTATTTTTTCGAGAAGGTTATGAATTTGATTACGTTTTTGATTGGACCATTTTGAAGTATCAGCAGTCTCAAAAGAATACAGTGCAGCCTCCCTTATCTCCAGTTCCTGGAGCAAGTAACAGTCGTGCAATTCCAATGGATGTTGACAACCAACAAGGGCTTGTCAAAGAGCGCATTAGATCAGGCAATGCTACTGGTTCTGGTGTTAAAATTCAGTTTAAATCACCAGTTGGTAGAAATTTGAGTTCTGAAAATCCTCTTGACATGAATATTTTTGGAGAAGCAAATATGCCCTCTACTTCATATTCTCCTGCTGCGCATGTCTTCTGCCAAGTGAATGTCAAACATGCTGTGAATCCTATGAAGATTCCTAGTATACATATACAACCCAGGCTTGGCTCCTGTGCTGTACATAGATGTCAAATGTGGCACACAGCAATCTTATGTATTAAGGTTATCAAAAATGTAAATTATACTGATACAGAGGAATACATTATGGATGAAAGATCACTGAAATATTGGTTTTTTATGAGTTATCAAAGGAACATACTTCATAATGCCACTACTTCTGATGAATAA 1404 0.4095 MERIVGGKYKLGRKIGSGSFGEIYLATHIDTFEIVAVKIENSKTKHPQLLYEAKLYNILQGGSGIPSIKWSGIDGEDNVLVLDLLGPSLEDLFVYCGRKFSLKTVLMLADQMITRIEYVHSKGFLHRDIKPDNFLMGLGRKANQVYIIDFGLAKRYRDSTTNRHIPYRENKNLTGTARYASCNTHLGIEQSRRDDLESLGYVLLYFLRGSLPWQGLKAATKKQKYDKICQKKLSTPIEVLCKSHPVEFASYFHYCHSLTFDQRPDYGFLKRLFRDLFFREGYEFDYVFDWTILKYQQSQKNTVQPPLSPVPGASNSRAIPMDVDNQQGLVKERIRSGNATGSGVKIQFKSPVGRNLSSENPLDMNIFGEANMPSTSYSPAAHVFCQVNVKHAVNPMKIPSIHIQPRLGSCAVHRCQMWHTAILCIKVIKNVNYTDTEEYIMDERSLKYWFFMSYQRNILHNATTSDE* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00308 467 CDD STKc_CK1_delta_epsilon 8 282 - -
Rops2g00308 467 Gene3D Transferase(Phosphotransferase) domain 1 1 324 - -
Rops2g00308 467 SMART serkin_6 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops2g00308 467 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Rops2g00308 467 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Rops2g00308 467 FunFam Casein kinase I isoform delta-like 1 340 - -
Rops2g00308 467 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Rops2g00308 467 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops2g00308 467 PANTHER CASEIN KINASE-RELATED 7 326 - -
Rops2g00308 467 Pfam Protein kinase domain 9 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00308 Rops-Chr2 4707516 4712716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00308 9 234 EF-hand Containing Proteins AT4G23650 28.879 2.76e-14 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Rops2g00308 Pkinase 1.1e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00308 K08960 - gmx:100779936 727.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00308 2 4707516 4712716 Rops2g00308 2 4707516 4712716 ECH
Rops2g00308 2 4707516 4712716 Rops5g00130 5 2131816 2137223 PCT