Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00295 ATGTCTGTGCCATTGGAGCACGGGTATGGTGGCTTGACACAGGTTTCTTCAATGGAAAACTCTGACAAGAGGAGCATTGGGTTGAACCTTAAGGCTACTGAACTGAGGCTTGGGTTGCCAGGTTCTGAGTCACCAGAGAGGGATGGTTTGGAGGACAAGAATGGTGGGTTTTCTGCCCCACTAGGCTTGGTGAAGAGTTTGGTGTCTGGGGCCAAGAGGGGTTTCTCGGATGCCATTGATGGAGGTTCTGGGAAGTGGGTTCTCTCTGGGAATGGTGGAACTGAAGTGGGTTTGGGTAAAGATGGAAGCTTGTTCTCTCCAAGGGGTGTTAGTGGTGCCAACTCTCTCTCTCTTGCTGCACCTGACTGCACCAACCAACAAACGCCTTTGGCTGTCAAAGAAAGTGTTCCGCAGTCTCCAAAGCCATTGCATGAGAAGAAGCCTCAGATTTCTGCTCCAGCTGCAAAGGCACAAGTTGTGGGATGGCCACCAATCCGTTCTTTCAGGAAGAACTCAATGGCTACTCAGCCTCAGAAGGATGATGCTGATGCAGAAGCCAAGTCTGGATGCCTTTATGTAAAAGTCAGCATGGAAGGCGCCCCGTACTTGAGGAAAGTGGATCTGAATAGTTTTAGCTCTTACAGGGAACTTTCTTCAGCGCTGGAAAAGATGTTTAGTTGTTTTACAATAGGTCAATGTGGCTCTTATGGGGTTTCCAGTCGAGAAAATTTAAGTGAAAGTAGATTGATGGATCTTCTTCATGGTTCGGAATATGTGCTTACTTATGAAGACAAGGATGGTGACTGGATGCTAGTTGGTGATGTTCCCTGGGAGATGTTCACTGACTCTTGCAAGAGGCTGAGGATAATTAAGAGTTCTGAAGCAATTGGGCTAGCACCTAGAGCCATGGAAAAGTGCAAAAGTCGCAACTAG 933 0.477 MSVPLEHGYGGLTQVSSMENSDKRSIGLNLKATELRLGLPGSESPERDGLEDKNGGFSAPLGLVKSLVSGAKRGFSDAIDGGSGKWVLSGNGGTEVGLGKDGSLFSPRGVSGANSLSLAAPDCTNQQTPLAVKESVPQSPKPLHEKKPQISAPAAKAQVVGWPPIRSFRKNSMATQPQKDDADAEAKSGCLYVKVSMEGAPYLRKVDLNSFSSYRELSSALEKMFSCFTIGQCGSYGVSSRENLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCKRLRIIKSSEAIGLAPRAMEKCKSRN* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00295 310 ProSiteProfiles PB1 domain profile. 190 292 IPR000270 GO:0005515
Rops2g00295 310 MobiDBLite consensus disorder prediction 13 27 - -
Rops2g00295 310 Gene3D - 184 303 - -
Rops2g00295 310 Pfam AUX/IAA family 33 301 IPR033389 -
Rops2g00295 310 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 28 297 IPR003311 GO:0005634|GO:0006355
Rops2g00295 310 FunFam Auxin-responsive protein 185 302 - -
Rops2g00295 310 MobiDBLite consensus disorder prediction 135 156 - -
Rops2g00295 310 MobiDBLite consensus disorder prediction 1 56 - -
Rops2g00295 310 SUPERFAMILY CAD & PB1 domains 187 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00295 Rops-Chr2 4598228 4601190 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00295 193 300 B3 DNA Binding Superfamily AT4G23980 30.556 2.60e-09 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Rops2g00295 AUX_IAA 3e-87 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00295 K14484 - gmx:100803754 474.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00295 2 4598228 4601190 Rops5g00137 5 2227554 2232814 PCT