Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00293 ATGAACAGAGGTGTTCTTCAGAGCTCACCGGTGCAACAAACGATGGCCGGGAACCCTAACAGTTGGTGGAACATCAACACCATGCGCCCTTCTCCTCAGCAACCTTCTCCTTTCTTTTCATCTCCTTCCAACTTTCTAACTCCATCATATGCTCCTACTTCTTCTCTTCCTTTTCCTTCTTCTTCATCTTGGCATGAAAATCAAGAGCTTCCTGAGTCATGGAGTCAGCTACTCATGAGTGGAGTGGTGTCTGAAGAAGATAAGGCCAATATGTGTCAGGTTCAGTCTAAGAAGTTGGAGAACTGGGAGGAGCAAATGCTAAGACAGACTCCAAATGCTTCTCTTGTTGATGTTAAGCAAGAAAGCTCGGTGAACAGCTATGTATATGGACATGGAAACGAAGAATTTCAGGCAGCAAAGCCAACCTGGTCTCACATAGTACCTGCTTCTTCCTCCAAATCATGTGTAACAAGTTTCAGTAGCAGCATGTTGGATTTCTCTAACAATAAGACGGATACGAGGCCTGCTCCATCAGATCCATCTTCTGAGTGCAATAGCACTGCAGCTGGTGGGGCATTCAAGAAAGCCAGGGTTCAACCGTCTACAACTCAGTCGACCTGCAAGGTTAGGAAGGAGAAGTTAGGTGACAGAATTACAGCCCTTCATCAACTCGTTTCTCCATTTGGGAAGACTGACACGGCGTCTGTCTTGTTAGAAGCTATTGGGTATATTAGATTCCTTCAGAGTCAAATTGAGGCCCTTAGCTTACCATACTTGGGCAGTGGATCAGGAAACATGAGGCACCAACAATATGTTCAAGGAGAGAAGAATTGTAAATTCCCTGAAGACCCTGGTCAGCTGCTGAATGAGAACTCATTGAAGAGGAAGGCAGCTAGTGAGCAGGATTCTCAAGAAGAACAAAAGAAGGACCTGAGGAGTAGAGGGCTGTGTTTGGTGCCAGTCTCATGCACACTGCAAGTTGGAAGTGACAATGGAGCTGATTATTGGGCTCCTGCTTTTGGTGGGGGATTTAGGTGGCGGAGCCCGGTGACGTCATCATTGCACTTCACATCCTCAATCACCGAGGGAACAACATCTTTGCTATCTCGTGAAGACTTTCGTTCGTCCAAAACGCTGTTGTTCGTCCCCGCAGTTCAATCCTCGCACCGTTCCTCTCTTTCTCGCTCGCAAGGCTACGCTAATCTCTCTGAATCTCCGCTGCCTTTGAAATTTAAGCATGCAGCGGCTGTCATTGGGAATAAGATGATAGTAGTTGGTGGAGAATCTGCTACTGTGATCTGGGATATCAGCTATTTCATGAGCTGGAGCCTTTCATATCGAGTGATCATCGCAGCTAGCGGAGGTGAAGCATGGACCCTTGTATCAGCCAGGTTCTCACAAGTCCCTGCCTCTGTTTGCACCACTACTTCTTCTGCAGGTTGCAATTGGTTTATTAGAGATATTTACCGATCCAAATGTTTAAAAATAACGTAA 1494 0.4632 MNRGVLQSSPVQQTMAGNPNSWWNINTMRPSPQQPSPFFSSPSNFLTPSYAPTSSLPFPSSSSWHENQELPESWSQLLMSGVVSEEDKANMCQVQSKKLENWEEQMLRQTPNASLVDVKQESSVNSYVYGHGNEEFQAAKPTWSHIVPASSSKSCVTSFSSSMLDFSNNKTDTRPAPSDPSSECNSTAAGGAFKKARVQPSTTQSTCKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQSQIEALSLPYLGSGSGNMRHQQYVQGEKNCKFPEDPGQLLNENSLKRKAASEQDSQEEQKKDLRSRGLCLVPVSCTLQVGSDNGADYWAPAFGGGFRWRSPVTSSLHFTSSITEGTTSLLSREDFRSSKTLLFVPAVQSSHRSSLSRSQGYANLSESPLPLKFKHAAAVIGNKMIVVGGESATVIWDISYFMSWSLSYRVIIAASGGEAWTLVSARFSQVPASVCTTTSSAGCNWFIRDIYRSKCLKIT* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00293 497 MobiDBLite consensus disorder prediction 168 188 - -
Rops2g00293 497 Coils Coil 294 314 - -
Rops2g00293 497 MobiDBLite consensus disorder prediction 1 43 - -
Rops2g00293 497 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 208 258 IPR036638 GO:0046983
Rops2g00293 497 Gene3D - 202 257 IPR036638 GO:0046983
Rops2g00293 497 CDD bHLH_AtbHLH_like 208 255 IPR045239 -
Rops2g00293 497 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 65 327 - -
Rops2g00293 497 FunFam Transcription factor bHLH123 family 208 271 - -
Rops2g00293 497 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 198 247 IPR011598 GO:0046983
Rops2g00293 497 MobiDBLite consensus disorder prediction 168 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00293 Rops-Chr2 4522077 4539519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00293 1 287 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 45.961 1.19e-71 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00293 - - gmx:100785156 562.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00293 2 4522077 4539519 Rops2g00293 2 4522077 4539519 ECH
Rops2g00293 2 4522077 4539519 Rops5g00138 5 2267420 2271649 PCT