Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00290 ATGAACACCGTAACCATCACGACTCGATCTCAGATCCTCCGCTACACCGCTGCATTCATCTCCGGCGTCGTTTCGCAATCGGAACTACGTCGCCGCCTGATTGCCACTCTCTATCGTGAGACCCCAATCTCCAACCAGGTCACCGTAAAACACCTGAACCTCGCCGCGAACACCCTAGAAAGCGCCATCTCCTTCTCGAACCCCGCCACACGCTCCTCCTCACTCTCCCTCGCCGAGAAGCTTCTCCTACCTCTCCCTGAATACCCTGTCTCCTCCTTTCTTCTCTCTCTCATTCGCTTCCTTTTCAATCGGCCATTCGAATCTGCCATAAGCCTCCTCAGAATCTTCCATTCGAATCCTTCCCTCGCCCGATCCGAAATCGCACCGGCTCTCTACGAGCGCCTCTTTTCTCTCCATCTCTTCCCTGTTTTCCGGTGGTTCGATGAGCAGAGAACGCGAATTTTGTCCTCCGCTTCTGCGACATCAAGCGGTGATTACTCAGTTTCGGATGAGTCTGTGGTTTTGCCTTATGCGAAATTGCTGTCGAAGATGAGCGAGGATCAAGCGTTGAAGCTGAGGGAGTTGGAGAGAGAGTACGAAGAGGTTCTGGATGAGAACTGTAGGGTTTTTGCGGTGTATTTCAAAGAGGTTTTGGTGAATGAAGATGGAGATGCAACAATTAGTCCACCATTGTTGATAATGAAGAGAGCTGCAGAAGGTGATAGTAACGTAAAGGAGGAAATAGCAATGACTCTGTTCGAGAACGGACGGTATAATCCAATATGGTCCGAAAGGGAAGCATCTATTGAATTTTTGAGCAGCAGTTCCAGCAGCAGATCCTCCCCCGCGCCATTTTATCCTCAAAGAGTCTCTCCAAGAATCCTCAAGCCCCAAAAATCCTCAAAATATTGGACAACACCAGTCTATTTAAATTCAGCCGCCAAGACTGAGTTTTCTTTAGATGAGAATTTGCTTTGTTCTTCTTCAGATTCTGAAGCAGAAAATGAGGAAAAGGACAAAAATATGACATTGTTGGAGCCTCGACAAAGCCAAACCCACCAACAAATTCAAACCATCTTCAAAGAATCCAGTAGTTCCCTAGATTATCCTATGGCAGACTACGATAACCCGCCGCATGGAAATGGAAAACATACACCTCCCAAAGACTTTGTCTGTCCAATAACTAGTAACATATTTGATGATCCAGTGACTCTTGAGACTGGTCAGACATATGAACGTAAAGCCATCGAGGAATGGTTCAATAGGGGGAACTTAACATGTCCCATCACTCGCCAGAAGCTGCAAAACACCCAGCTACCTAAGACAAATTATGTGCTCAAAAGACTAATTGCTAGCTGGAAAGAATGCAACCCCAATTCAATCCCGCCGCCATGTGAGAGTCCATACAAAGATACTGAGGCAGTAGTAAAGACAACAATGCCTTCAACTTCTCCTGTTAGTGTTATCACACAAGCCACCGTTGATGGGATGATTAGTGAGTTACGCCATGCAATCAATAATCTGTATATGTCAGAGATTCTGGAGGAATCTGAAATGGCCGTGCTTCAAATTGAGAAGTCGTGGAGAGGAGTGAATCTGGGAGTGGATATCCATAGCATGCTATCAAAACCTCCAATAATTAATGGGTTTGTGGAGATCCTTTTCAACTCTGTTGAGCCCAGGGTGCTACAAGCAGCGGTTTTCCTTTTGGCTGAGATGGGCTCCAGAGACAATGCTGTTAGTCAGACTCTCACACGTGTGGACACTGACGTGGAATGTATCATGGCTCTTTTCAAGAAAGGGTTGACAGAGGCTGTGGTGCTGTTGTATGTCCTAAACCCTTCCATTGAGAGTCTTGTGGAGATGGCCATAGTGGAGTCTCTCATAGCAGTTTTGAATAAGAAAGAGGAAGACTTGGTTAAGATGTGTTTAAAGCCCAAAACAGCTGCAGTGCTTTTACTGGCACAGATTGTTGGAAGCAGTGAGGAGATAATGGCATCTTCGGTCGTCAAGACTCTGTTCTCTGAAAAAGCTATTGGAACTATTGTTGGCAGTTTGGGGGCTGAATGGGCAGAGGAGAGGATTGCTGCAGTGGAGATCTTATTGAGATGCATGCAAGAGGATGGAACTTGCAGGAACACCATTGCTGATAAAGCTGAGCTGTCTCCTATTTTGGAAAGCTTCATTGGTGCAACTGATGGAGAGCGTTTTAAAATTGTTAAATTTTTTTCTGAAATAGTCAAATTAAATAGGAGGACATGCAATGAACAAATCCTCCACATTATAAAGGAAGAAGGACCATTTAGTACCATGCATATTCTCCTTATTCATTTGCAGACAGCCCTTCAAGATCAATGTCCAGTCACGGCCGGCCTCTTACTCCAACTTGATCTTCTGGTTGAGCCAAGAAAGATGAGCATATACCGTGAAGAGGCAATGGATACTCTTATTTCATGCCTGAGAAACACAGATTTCCCTGCTACCCAATTTGCAGCTGCTGATACAATCATGTCACTGCAAGGGAGGTTCAACTTCTCTGGAAAGCCTCTCACCAGAGAAGTCCTTCTTAAACGTGCAGGTATTGGCAAAAGTTCCAGAAGTCTTGTACAGGTGGATCAGATCAGCAACTTCTGCCCAGAAATTGAAATAACTCCAGAAGAAGAGAAGGCAGCCGACGATTGGGAAAGAAAAGTTGCATCTGTTCTAGTTAGTCACGAGTTTGGTATACTTTTTGAGGCTTTAGCAGATGGCATGAAGAGCCGAAATCCAGAACTACGTTCAATATGCTTTACATCAGCTACGTGGCTCATATACATGTTGACCATTCTACCAGATACAGGGATACAAGGAGCAGCCCGTGTTTGCTTGTTAAAACAGTTCATAACTAAATTAAATTCTGCTAGGGACGTAGAAGACAGAATCCTTTCTATGCTTGCTCTCAATAGCTTTCTTCATTTCTCTGATGGCTTACTTGATCTAACTTCCTACACTAAGGAAATCTTAAAAGGTTTGAGAGAGTTAAAGAGATCCTTTCCCTTGGCATCAGCAATGCTGAAAGTTCTGGCTCAAGAGAATGAATCTAAAGCAGACATTTGGATACATAAAGAGCTAATTCAAGTAGATTGCAGCGAGAATGGAAAAGTGCTGTCTGTCATTTGCTTTAAGGATAAATTTTTTTCAGGTCATACAGATGGCTGTATTAAGGTCTGGACATTAAAGGATAACTTATTTCATCTGTTGCAAGAGATCCAAGAACATACTAAGGCTGTGACAAAACTGGTGATTTCAGAATCTGGTGACAGACTATACAGTGGTTCACTTGACCGAACTGCAAAGGTCTGGTCTATTGGAGAGGCGGCAATACATTGTGTACAGGTGCTTGATATGAAGGATCCAATTCATAATTTTGTTGTAATCAATAGCATAGCTTGTTTCATTCCGCAGGGGACTGGTGTCAAGGTTCAGTCATTGAATGGAGAATCAAAGTTGTTAAATTCTAATAAATATGTGAAGTGCTTGGCTCATGATCATGGGAGATTATACTGTGGATGCCACGACAGTAGTGTTCAGGAGATACATTTGGCCACTGGAACAGTCAGTACTGTTCAAAGTGGTTCTAAAAAATTACTTGGGAAAGCAAATCCTATTCATGCACTGCAAATTCATGGTGAACTTATATACGCAGCTGGCTCTTCCTTGGATGGATCTGCTATAAAGATATGGAACAATTCCAATTACAGTATGGTTGGATCACTGCAAACTGGATTGGAAGTGCGGGCAATGGCAGTGAGCTCAGAATTAGTTTATTTAGGGTGCAAGGGAGGTGCTGTAGAAATTTGGGATAAGAAGAAACACAATAGAGTTGACACGTTACAAGTGGGTACAAGTTGTAAGATTAATTGCATGGCTTTAGACAGCAATGAAGAAATTTTGGTGATTGGAACTTCAGATGGCCAAATTCAGGCTTGGGGAATGAATTAA 3981 0.4351 MNTVTITTRSQILRYTAAFISGVVSQSELRRRLIATLYRETPISNQVTVKHLNLAANTLESAISFSNPATRSSSLSLAEKLLLPLPEYPVSSFLLSLIRFLFNRPFESAISLLRIFHSNPSLARSEIAPALYERLFSLHLFPVFRWFDEQRTRILSSASATSSGDYSVSDESVVLPYAKLLSKMSEDQALKLRELEREYEEVLDENCRVFAVYFKEVLVNEDGDATISPPLLIMKRAAEGDSNVKEEIAMTLFENGRYNPIWSEREASIEFLSSSSSSRSSPAPFYPQRVSPRILKPQKSSKYWTTPVYLNSAAKTEFSLDENLLCSSSDSEAENEEKDKNMTLLEPRQSQTHQQIQTIFKESSSSLDYPMADYDNPPHGNGKHTPPKDFVCPITSNIFDDPVTLETGQTYERKAIEEWFNRGNLTCPITRQKLQNTQLPKTNYVLKRLIASWKECNPNSIPPPCESPYKDTEAVVKTTMPSTSPVSVITQATVDGMISELRHAINNLYMSEILEESEMAVLQIEKSWRGVNLGVDIHSMLSKPPIINGFVEILFNSVEPRVLQAAVFLLAEMGSRDNAVSQTLTRVDTDVECIMALFKKGLTEAVVLLYVLNPSIESLVEMAIVESLIAVLNKKEEDLVKMCLKPKTAAVLLLAQIVGSSEEIMASSVVKTLFSEKAIGTIVGSLGAEWAEERIAAVEILLRCMQEDGTCRNTIADKAELSPILESFIGATDGERFKIVKFFSEIVKLNRRTCNEQILHIIKEEGPFSTMHILLIHLQTALQDQCPVTAGLLLQLDLLVEPRKMSIYREEAMDTLISCLRNTDFPATQFAAADTIMSLQGRFNFSGKPLTREVLLKRAGIGKSSRSLVQVDQISNFCPEIEITPEEEKAADDWERKVASVLVSHEFGILFEALADGMKSRNPELRSICFTSATWLIYMLTILPDTGIQGAARVCLLKQFITKLNSARDVEDRILSMLALNSFLHFSDGLLDLTSYTKEILKGLRELKRSFPLASAMLKVLAQENESKADIWIHKELIQVDCSENGKVLSVICFKDKFFSGHTDGCIKVWTLKDNLFHLLQEIQEHTKAVTKLVISESGDRLYSGSLDRTAKVWSIGEAAIHCVQVLDMKDPIHNFVVINSIACFIPQGTGVKVQSLNGESKLLNSNKYVKCLAHDHGRLYCGCHDSSVQEIHLATGTVSTVQSGSKKLLGKANPIHALQIHGELIYAAGSSLDGSAIKIWNNSNYSMVGSLQTGLEVRAMAVSSELVYLGCKGGAVEIWDKKKHNRVDTLQVGTSCKINCMALDSNEEILVIGTSDGQIQAWGMN* 1327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00290 1326 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 378 461 IPR013083 -
Rops2g00290 1326 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 5 1325 - -
Rops2g00290 1326 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1292 1326 - -
Rops2g00290 1326 SUPERFAMILY ARM repeat 24 997 IPR016024 -
Rops2g00290 1326 ProSiteProfiles Trp-Asp (WD) repeats profile. 1083 1116 IPR001680 GO:0005515
Rops2g00290 1326 Coils Coil 178 205 - -
Rops2g00290 1326 CDD RING-Ubox_PUB 387 439 IPR045210 -
Rops2g00290 1326 Pfam WD domain, G-beta repeat 1080 1115 IPR001680 GO:0005515
Rops2g00290 1326 SUPERFAMILY WD40 repeat-like 1055 1325 IPR036322 GO:0005515
Rops2g00290 1326 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1083 1116 - -
Rops2g00290 1326 Gene3D - 531 840 IPR011989 -
Rops2g00290 1326 ProSiteProfiles Trp-Asp (WD) repeats profile. 1292 1326 IPR001680 GO:0005515
Rops2g00290 1326 Gene3D - 1030 1140 IPR015943 GO:0005515
Rops2g00290 1326 SMART Ubox_2 389 453 IPR003613 GO:0004842|GO:0016567
Rops2g00290 1326 Pfam U-box domain 387 456 IPR003613 GO:0004842|GO:0016567
Rops2g00290 1326 Gene3D - 1141 1326 IPR015943 GO:0005515
Rops2g00290 1326 SUPERFAMILY RING/U-box 383 459 - -
Rops2g00290 1326 SMART WD40_4 1076 1115 IPR001680 GO:0005515
Rops2g00290 1326 SMART WD40_4 1034 1071 IPR001680 GO:0005515
Rops2g00290 1326 SMART WD40_4 1245 1281 IPR001680 GO:0005515
Rops2g00290 1326 SMART WD40_4 1150 1193 IPR001680 GO:0005515
Rops2g00290 1326 SMART WD40_4 1196 1242 IPR001680 GO:0005515
Rops2g00290 1326 SMART WD40_4 1284 1324 IPR001680 GO:0005515
Rops2g00290 1326 ProSiteProfiles U-box domain profile. 385 460 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00290 Rops-Chr2 4506749 4514638 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00290 383 464 U-box Gene Family AT1G23030 50.000 6.18e-18 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00290 - - gmx:100808867 2113.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00290 2 4506749 4514638 Rops2g00290 2 4506749 4514638 ECH