Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00287 ATGGAGCATCCCCCAAAGAGTTGGAGCATCCATACCCGATCCGAAATCATATCCAAGTACCAAGTCATGGAGCGAATCGGCTCCGGAGCTTACGCCGACGTCTACCGTGGTCGTCGCCTCTCCGACGACCTCACGGTGGCACTCAAGGAAATCCACGACTACCAGTCCGCGTTCCGAGAAATCGAGGCGCTGCAGATGCTGCAAGGCTCCCCAAACGTCATCGTTTTTCACGAGTACTTCTGGCGTGAAGATGAGGACGCCGTCCTCGTCCTCGAGTTCCTCAAGACCGACTTGGCCACCGTCATCGCCGACGCAGCCAAGGGCAACGGAGAACATGGAGGTATTTCTCTCGGAGAGATCAAGCGGTGGATGATTCAGATTCTTTGTGGCGTCGATGCCTGTCACCGGAACATGATCGTGCATCGTGACTTGAAGCCCTCTAATCTCTTGATTTCTGATAGTGGAATCCTCAAGTTGGCAGATTTTGGACAGGCAAGGATACTCATGGAGCCTGGATTTTATGCTTCCGAGGAAAACCCACAACCATGTGAACATGATGCTTCTAATAATGAAAGTTCACTTCATCATCCTGAAGCTTTTCCTCAGACTGACAACTTATGCAGAGCAGGAAATGGAAATGAAGACCAGGGAACCATTTGTCGTGAAGAATGTTTTAGAGGTTTAGATGAGGTGGAAACAAAGAGCTCCACAAATGACATTGATATGGATACAAACATTCCTGATGGAAATACCTCTTGTCTTGCAACTTACACAACAAGTGACATAGATAACGATCCTTTGGAAACTTCGTTTAGTTATGAGGCAATGGAGGGAGAAGGTAAAGAACTTGGTTGTCTCACATCATGTGTTGGAACTCGTTGGTTCAGGGCTCCTGAGTTGCTTTATGGATCCACTGACTATGGTTTAGAGATTGATCTCTGGTCCTTGGGATGTATCTTTGCGGAACTCTTTACTCTTAAGCCCTTATTTCCTGGAACTGCTGATATTGATCAGCTCAGCAGAATTATTAGTGTTTTGGGCAACCTTGATGAGGAAGCTTGGCCTGGTTGTTTAAAACTTCCTGACTATGGAATAATCTCGTTTAGCAAGGTAGAAAACCCTATTGGTCTAGAAGCCTGCCTGCCCAACCGCTCCCCTGATGAAGTGTCTCTGATAAAAAAACTGGTTTGTTATGATCTGGCTATGAGAGCTACAGCAATGGAGCTACTCCATGACAAATACTTTAATGAAGAACCTCTTCCTGTTCCTGTTTCTGAGCTGCGAGTTCCTTTGACCAGAAAAGGAGAAGACCAGGATTCACTTGGTGAGTGGCATGATTACAATGACATGGGTTCTGATTCTGATTTTGATGACTTTGGCCCTGTGAATGTGACCAGAACTGGTACTGGTTTCTCCATACAGTTTCCTTGA 1431 0.464 MEHPPKSWSIHTRSEIISKYQVMERIGSGAYADVYRGRRLSDDLTVALKEIHDYQSAFREIEALQMLQGSPNVIVFHEYFWREDEDAVLVLEFLKTDLATVIADAAKGNGEHGGISLGEIKRWMIQILCGVDACHRNMIVHRDLKPSNLLISDSGILKLADFGQARILMEPGFYASEENPQPCEHDASNNESSLHHPEAFPQTDNLCRAGNGNEDQGTICREECFRGLDEVETKSSTNDIDMDTNIPDGNTSCLATYTTSDIDNDPLETSFSYEAMEGEGKELGCLTSCVGTRWFRAPELLYGSTDYGLEIDLWSLGCIFAELFTLKPLFPGTADIDQLSRIISVLGNLDEEAWPGCLKLPDYGIISFSKVENPIGLEACLPNRSPDEVSLIKKLVCYDLAMRATAMELLHDKYFNEEPLPVPVSELRVPLTRKGEDQDSLGEWHDYNDMGSDSDFDDFGPVNVTRTGTGFSIQFP* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00287 476 SMART serkin_6 20 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops2g00287 476 MobiDBLite consensus disorder prediction 177 202 - -
Rops2g00287 476 Gene3D Phosphorylase Kinase; domain 1 11 108 - -
Rops2g00287 476 SUPERFAMILY Protein kinase-like (PK-like) 5 431 IPR011009 -
Rops2g00287 476 ProSiteProfiles Protein kinase domain profile. 20 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops2g00287 476 Gene3D Transferase(Phosphotransferase) domain 1 109 422 - -
Rops2g00287 476 PANTHER CELL DIVISION PROTEIN KINASE 18 421 - -
Rops2g00287 476 MobiDBLite consensus disorder prediction 182 199 - -
Rops2g00287 476 Pfam Protein kinase domain 282 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops2g00287 476 Pfam Protein kinase domain 20 171 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops2g00287 476 ProSitePatterns Protein kinases ATP-binding region signature. 26 49 IPR017441 GO:0005524
Rops2g00287 476 ProSitePatterns Serine/Threonine protein kinases active-site signature. 139 151 IPR008271 GO:0004672|GO:0006468
Rops2g00287 476 FunFam Cyclin-dependent kinase F-1 11 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00287 Rops-Chr2 4487100 4489553 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00287 2 476 Core Cell Cycle Gene Families AT4G28980 62.552 0.0 617
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CCRK Rops2g00287 Pkinase 6e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00287 - - ahf:112726382 733.406