Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00277 ATGCCATCCCTCTCCATCTTCCCATCACTGCCATCGCTTCAAAACCCTAACTTGGACCATGCCCACCTCTTCAAACCCATCAAAACCCTCAATTCCCGTTTAAATTCAACGATTCCTTCACCACCACACTCTCATCGCCACTTCTCGCACCTCTACAAAACCACCACTACTCTTCACTGCAGAATCAACTGCAAAGCTTTGAAGGATTCCGGCCAAGACACTAAGGCGGTGTTGGACTCTGATGGAGGCGGAGGAGACGGTGGTGGCGACGGCGACGGCGGAGGTGGAGGTGACCGGGAAGTGGAGAAAAAAGATGGTTCTTCGGGGCCTTTGCCAGAATGGTTGAATTTTACTTCTGATGACGCAAAAACGGTGTTTGCGGCTATTGCAATATCGCTTGCATTTCGTACGTTCGTGGCTGAGCCGAGGTACATTCCTTCGTTGTCAATGTATCCTACATTTGATGTTGGAGATCGAATTGTTGCTGAAAAGGTTTCTTACTATCTTAGAAAGCCATGTACAAATGACATAGTGATATTCAAAAGCCCTCCAGTCCTTCAAGAAGTTGGATATAGTGATGATGATGTTTTTATAAAACGCGTGGTTGCAAAGGAAGGTGACATTGTAGAGGTTCGTAAAGGGCATCTTGTAGTTAATGGGGTTGAGAGGAATGAAAAGTTCATCCTTGAACCACCTTCTTATGAGATGAAACCCACACGTGTGCCAGAGAACTACGTTTTTGTGATGGGAGACAACCGCAACAACAGCTATGATTCCCATGTTTGGGGTCCCCTGCCAGCTAAGAATATCATAGGTAGATCAGTATTCCGCTATTGGCCACCAAATAGAATTGCTGGCACTGTTTCTGAGGAAGGTTGCCCTGTTGAAACCAAGCAGGAGACTACACTAACATCTCAATGA 921 0.4625 MPSLSIFPSLPSLQNPNLDHAHLFKPIKTLNSRLNSTIPSPPHSHRHFSHLYKTTTTLHCRINCKALKDSGQDTKAVLDSDGGGGDGGGDGDGGGGGDREVEKKDGSSGPLPEWLNFTSDDAKTVFAAIAISLAFRTFVAEPRYIPSLSMYPTFDVGDRIVAEKVSYYLRKPCTNDIVIFKSPPVLQEVGYSDDDVFIKRVVAKEGDIVEVRKGHLVVNGVERNEKFILEPPSYEMKPTRVPENYVFVMGDNRNNSYDSHVWGPLPAKNIIGRSVFRYWPPNRIAGTVSEEGCPVETKQETTLTSQ* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00277 306 MobiDBLite consensus disorder prediction 74 113 - -
Rops2g00277 306 MobiDBLite consensus disorder prediction 93 107 - -
Rops2g00277 306 ProSitePatterns Signal peptidases I signature 3. 246 259 IPR019758 GO:0004252|GO:0016020
Rops2g00277 306 SUPERFAMILY LexA/Signal peptidase 136 285 IPR036286 -
Rops2g00277 306 ProSitePatterns Signal peptidases I serine active site. 147 154 IPR019756 GO:0004252|GO:0016020
Rops2g00277 306 NCBIfam signal peptidase I 123 281 IPR000223 GO:0006508|GO:0008236|GO:0016020
Rops2g00277 306 PANTHER SIGNAL PEPTIDASE I 110 285 IPR000223 GO:0006508|GO:0008236|GO:0016020
Rops2g00277 306 Pfam Signal peptidase, peptidase S26 122 279 IPR019533 GO:0004252|GO:0006465
Rops2g00277 306 PRINTS Bacterial leader peptidase 1 (S26A) family signature 241 260 IPR000223 GO:0006508|GO:0008236|GO:0016020
Rops2g00277 306 PRINTS Bacterial leader peptidase 1 (S26A) family signature 138 154 IPR000223 GO:0006508|GO:0008236|GO:0016020
Rops2g00277 306 PRINTS Bacterial leader peptidase 1 (S26A) family signature 197 209 IPR000223 GO:0006508|GO:0008236|GO:0016020
Rops2g00277 306 FunFam Peptidase/ serine-type peptidase 147 278 - -
Rops2g00277 306 CDD S26_SPase_I 141 273 IPR019533 GO:0004252|GO:0006465
Rops2g00277 306 Gene3D Umud Fragment, subunit A 135 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00277 Rops-Chr2 4380414 4383422 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00277 150 280 MADS-box Gene Family AT1G29960 31.818 3.08e-11 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00277 K03100 - gmx:100815810 434.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00277 2 4380414 4383422 Rops2g00277 2 4380414 4383422 ECH