Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00259 ATGATCTTGATCAAGAAGAGAGGTGTGTACACAATCTTGATCGAAAATAAAAGCTTGATCAGAGTTGATCAAGAAGGAGTTGCAGGAGCTTCAGAGCGTGGTGCTTTGCTGCATAAGTTGAAGACAGACAGAACTGTTTCTTCGTGTGCTGCAAAATCAGAAGTGAAGATGACAAGTCGGCTGAAGGAAGATGAGAAAAATGAAAGAATAATTCGAGGTCTTCTCAAACTTACACCGAATCGAAGATGTATTAACTGCAACAGCCTGGGCCCACAATATGTGTGCACAAATTTCTGGACATTTATTTGCACAAACTGTAGTGGAATACACCGGGAATTTACACATCGAGTAAAATCAATTTCGATGGCTAAATTTACAGCACAAGAAGTAAGAGCACTTCAAGAAGGAGGAAATCAGCATGCAAAAGAAATCTATTTTAAAGAATGGGATCCACAACGTCATTCTTTGCCTGATAGCAGCAATGTTGACAGGCTCCGTGACTTTATTAAGCATGTTTATGTTGATAGAAGATTCACTGGTGAGAGAACCTATGACAAACCTCCAAGAGTAAAGGGTGACCACGATAATTTCTATGAGAACAGGAGGACTGAGACATATCAGGGAGGACCTAAAAGCCCTTCATATGACACGGACAGGTCTAGTCCTGGTGGAAGAAGTCCTGGATATGATCAAGAAAATAGGCAATATGGTGATTTAAAGAGAAGCCCTGGTCGTCCTCCAATTATCAATGATTGGCGTCGTGAAGATAGATTTGGGGATGGACGGAAATTTGAAGATCATAGAATATCTGATGGAGATACTAAGGTGGAAAGTCAATCTCCTGAGCGAGCCAAAGATATGGATTCTTCAACACCACCTGTGGGCCGACCTGTTAGGGATATTTTGGGAGAAAATGTAGTACCTCTTCGAATCATTGAACCCCCCAAAACAAACAGTGGACAGGCTGCCAATGGCTCAGCACTCACACAGAGAACTGCATCTTCCGGTAGCTTGGCATCCAGCAATGGAAACCCAGCAGAAGTTAAGCTTGAGACTACTAAGAGCCTTATTGATTTTGATGATGATCCTGAACCATCTGTTGTTCCTGCAATTCCCCAAGCCCAACAAACTATGGTGGCTCAACTCGTGAGGCCAGCAAATTCCAGTGATAACAATTGGGCCTCTTTTGAAGTTGCTCCTTATGCAAAAGCATCTCAGGGTCCTTCAACTATAAATCCACTTGAATCTGTGCTGTCCCAATTGTCAGTACCAGCACCTCTCCCTGCTCATGTTTCTGGAGTCCAAGGGCCTGTGATGGGATCTGCACTTACTGCTACTGCTGCTGGAGCTCCAACTGTTAGCAGCTTCTCATCATTCCCAGCCAATGGTGCTTCAGTAACATCTTCTGGATTAACAACTGCAGTACCTCTCAATAATGCAGGACAGTGGGCCAGTTTGCAGTATCAGCAACCATTGTTCACTACTGCTACCATTAGTCAGCCTACTATTCAACATTCTACACCACCTGTAAGCGGAGCTTTGAATAATCAGCCCTGGAATATGCCTTCTGTACCTGCGGTACAGGGGCATCCAAGCACACCAATGCCACATCTATCCCACCATGTCTCAATGCCTGTCAATGAGGCTAAATCCAGTGTTGTTTCAGAACCTTCTACTGTAGGCATAAAACCAAGTGGAAGAAATGAACTTCCTCAGGATCTATTCTCTGTAAAATATTCATCCTTCGCTGCTCCAGTACCAGGTTGGCAAATGGGTCCATCACCTGGCATGGGTATCTCAATTCAATATAATAATGTGGCGCCCATGCCAAGTTTTCTGCAACCATCAAAATCAACAAATCCATTTGATATCAGCAACGAACCAACTCAAGTTCAAGCCCCAGCTTTTCCTTCCATGTCATCTTTGCAAGGTGCTCTGCCTAATGTAACACCTTCAGCCACGATGCATCCTTCAAACATGGGTAATGCATCTCTTCCTTGGAAACCACCCTCGTCATCATCATATGTATCAGCGCTGCCTCTACAAGTACAAACTCTTGCATCAGCAATGGGAACAAGTTCATACATGGGGCAACAAATGCCAACTAACATTCCAATGCCAAGGCATCAAGGAATTGGGAGTTTTGGAACTGAGGGAGCTGCTTTTGGCTTCCCAAATTCAGATCAGCGGCTGATGAGTCAGTTGTCAACCCCTGCTCCCTCAAATCTCTTCCCTGCTGGAGGGAATCCGAATCCATTCGGATGA 2265 0.4428 MILIKKRGVYTILIENKSLIRVDQEGVAGASERGALLHKLKTDRTVSSCAAKSEVKMTSRLKEDEKNERIIRGLLKLTPNRRCINCNSLGPQYVCTNFWTFICTNCSGIHREFTHRVKSISMAKFTAQEVRALQEGGNQHAKEIYFKEWDPQRHSLPDSSNVDRLRDFIKHVYVDRRFTGERTYDKPPRVKGDHDNFYENRRTETYQGGPKSPSYDTDRSSPGGRSPGYDQENRQYGDLKRSPGRPPIINDWRREDRFGDGRKFEDHRISDGDTKVESQSPERAKDMDSSTPPVGRPVRDILGENVVPLRIIEPPKTNSGQAANGSALTQRTASSGSLASSNGNPAEVKLETTKSLIDFDDDPEPSVVPAIPQAQQTMVAQLVRPANSSDNNWASFEVAPYAKASQGPSTINPLESVLSQLSVPAPLPAHVSGVQGPVMGSALTATAAGAPTVSSFSSFPANGASVTSSGLTTAVPLNNAGQWASLQYQQPLFTTATISQPTIQHSTPPVSGALNNQPWNMPSVPAVQGHPSTPMPHLSHHVSMPVNEAKSSVVSEPSTVGIKPSGRNELPQDLFSVKYSSFAAPVPGWQMGPSPGMGISIQYNNVAPMPSFLQPSKSTNPFDISNEPTQVQAPAFPSMSSLQGALPNVTPSATMHPSNMGNASLPWKPPSSSSYVSALPLQVQTLASAMGTSSYMGQQMPTNIPMPRHQGIGSFGTEGAAFGFPNSDQRLMSQLSTPAPSNLFPAGGNPNPFG* 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00259 754 PRINTS HIV Rev interacting protein signature 117 138 IPR001164 GO:0005096
Rops2g00259 754 PRINTS HIV Rev interacting protein signature 99 116 IPR001164 GO:0005096
Rops2g00259 754 PRINTS HIV Rev interacting protein signature 80 99 IPR001164 GO:0005096
Rops2g00259 754 MobiDBLite consensus disorder prediction 317 347 - -
Rops2g00259 754 MobiDBLite consensus disorder prediction 314 347 - -
Rops2g00259 754 MobiDBLite consensus disorder prediction 182 201 - -
Rops2g00259 754 MobiDBLite consensus disorder prediction 182 299 - -
Rops2g00259 754 MobiDBLite consensus disorder prediction 202 228 - -
Rops2g00259 754 Pfam Putative GTPase activating protein for Arf 69 180 IPR001164 GO:0005096
Rops2g00259 754 PANTHER ARFGAP/RECO-RELATED 57 750 IPR044820 GO:0005096
Rops2g00259 754 FunFam Arf-GAP domain and FG repeat-containing protein 1 57 191 - -
Rops2g00259 754 MobiDBLite consensus disorder prediction 247 284 - -
Rops2g00259 754 SMART arf_gap_3 68 186 IPR001164 GO:0005096
Rops2g00259 754 Gene3D Arf GTPase activating protein 57 187 IPR038508 -
Rops2g00259 754 CDD ArfGap_AGFG 68 178 - -
Rops2g00259 754 SUPERFAMILY ArfGap/RecO-like zinc finger 67 179 IPR037278 -
Rops2g00259 754 ProSiteProfiles ARF GTPase-activating proteins domain profile. 68 186 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00259 Rops-Chr2 4096583 4111510 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00259 68 178 C2H2 Transcription Factor Family AT4G21160 34.188 2.93e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00259 - - gmx:100815114 1103.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00259 2 4096583 4111510 Rops2g00259 2 4096583 4111510 ECH