Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00249 ATGTATGGTGGTGACGAAGTATCAGCAATAGTGATTGACCTGGGTTCGCACACATGCAAAGCTGGTTATGCTGGCGAAGATGCTCCCAAAGCCGTTTTTCCCTCTTTTGTTGGTGCAATTGATCAAATGGACATTGATGGACCTGGTGATGCTGATGAGAATTCGGGAGGTGCTGTTGATTTACAAAACAATGCCAAAAATATTGATTCTGGCAAAACGAAGGGAAAATGCAAACTTTATGTAGGATCTCAATCATTAGGATACCGTAGAGACAACATGGAGGTGGTGTCACCGTTAAAGAATGGAGTTGTTGTTGACTGGAATATTGTAGACAACATATGGGATCATGCTTTGAGGGAATGCCTATTAGTTGATCCTAAAGAGCGTCCAATGCTACTTGCCGAACCATGTTCTAATACTCAAGAACAGAGAGAAAGGGCAGCGGAGCTTATGTTTGAAAAATACAAAGTACCTGCATTATTTTTGGCCAAGAATGCTGTTCTCACATCTTTTGCATCAGGGCGTTCCACATCGTTAGTTATTGATAGTGGGGGAGGATCAACTACAGTTGCACCAGTACTTGATGGTTATGTTCTTCAAAAGGCTGTGGTAACTTCTCCTATTGGAGGAGAATTTCTTACAGATTGCTTGATGAAAAGTTTGGAAGGCAAAGGTATCACAATAAAACCTCGGTATTCATTCAAGAAAAAGGAAATACAGCCTGGAAATATTCAGACTGTTAACCTTGATTTTCCACATACAACAGAAAGCTACAAACTCTACTCCCAGAGGGTGATTGCCAGTGATATCAAGGAATGTGTTTGCCGAACTCCAGATTCTCCATATGATGAGAGTGCATATTCTAACATTCCAATGACCCCATATGAGCTTCCTGATGGCCAGATAATTGAAGTGGGATCTGACAGATTCAAGATTCCTGACGTTCTTTTTAATCCATCACTGGTTCAGACAATCCCTGGCATGGAGAGTTTTGCAGAAATTGCTCCTTCAATTCCTGGTCTTCCAAAAATGGTTATAGAGAGCATTAATAAGTGTGATGTGGACATTCGAAGAGAACTATTTAGTACCATACTGCTTTCAGGTGGTACAGCTTTAATGCAACAATTGAAGGAACGCATTGAGAAAGACTTGCTAGAGGAATCCCCTCAAGCTGCTAGAGTAAAAGTATTTGCCAGTGGAAATACGACAGAAAGAAGGTTCAGCGTCTGGATAGGGGGGAGTATATTGGCTTCTCTTGGTTCCTTCCAGCAGATGTGGTTCTCAAAGTCTGAGTATGAAGAGCAGGGCGCTTCTTACATCCAAAGAAAATGCCCTTGA 1338 0.4163 MYGGDEVSAIVIDLGSHTCKAGYAGEDAPKAVFPSFVGAIDQMDIDGPGDADENSGGAVDLQNNAKNIDSGKTKGKCKLYVGSQSLGYRRDNMEVVSPLKNGVVVDWNIVDNIWDHALRECLLVDPKERPMLLAEPCSNTQEQRERAAELMFEKYKVPALFLAKNAVLTSFASGRSTSLVIDSGGGSTTVAPVLDGYVLQKAVVTSPIGGEFLTDCLMKSLEGKGITIKPRYSFKKKEIQPGNIQTVNLDFPHTTESYKLYSQRVIASDIKECVCRTPDSPYDESAYSNIPMTPYELPDGQIIEVGSDRFKIPDVLFNPSLVQTIPGMESFAEIAPSIPGLPKMVIESINKCDVDIRRELFSTILLSGGTALMQQLKERIEKDLLEESPQAARVKVFASGNTTERRFSVWIGGSILASLGSFQQMWFSKSEYEEQGASYIQRKCP* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00249 445 Gene3D - 182 384 - -
Rops2g00249 445 Gene3D - 3 181 - -
Rops2g00249 445 FunFam Actin-related protein 4 1 183 - -
Rops2g00249 445 CDD NBD_sugar-kinase_HSP70_actin 97 204 - -
Rops2g00249 445 Gene3D - 390 445 - -
Rops2g00249 445 PANTHER ACTIN 9 437 IPR004000 -
Rops2g00249 445 Pfam Actin 4 444 IPR004000 -
Rops2g00249 445 SUPERFAMILY Actin-like ATPase domain 174 444 IPR043129 -
Rops2g00249 445 SMART actin_3 7 445 IPR004000 -
Rops2g00249 445 FunFam actin-related protein 4 387 445 - -
Rops2g00249 445 SUPERFAMILY Actin-like ATPase domain 5 181 IPR043129 -
Rops2g00249 445 Gene3D Actin; Chain A, domain 4 210 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00249 Rops-Chr2 3971512 3979906 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00249 1 444 Cytoskeleton Gene Families AT5G09810 36.465 1.36e-91 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00249 K11340 - gmx:100819549 798.89