Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00218 ATGATCACAGACATGAAAGGTGCAGGTGCCTTGGGAGCCAAGACAGCACGAGCTTGTGATAGCTGCTTACGCAGAAGGGCAAGGTGGTTTTGTGCAGCAGATGATGCTTTCCTTTGCCATGGTTGTGACACTTTGGTTCACTCTGCAAATCAATTAGCAAGCAGACATGAAAGGGTTAGACTTCAAACTGCATCCTCTAAGATAACCGCACATGCATGGCACAGTGGATTCACACGCAAGGCAAGAACTCCACGTCACAACAAGCACTTGGCACTGCAACAACAACAACGTCTCAAAGACCAAGTGCTTTTCAACAACACTAGTATTCTTCCCCTTGTGCCCGACCTTGGAGTTGAAGAACCACAGATTGATGATGAGGCAGAGGAGCAGCTGCTATGTCGTGTGCCTGTGTTCGACCCTTTTGATGCTGAGCCTTGCAATATATACAACGAACAAAGATTGAACCCCACCATAAAGAAAGATGCTGCAGATGAAGAAGAAGCCTGTGACTTAGAGAGTTTTTCTGATTTTGACGTAGATCTTGCTGAGTTTGCAGCTAGTGTTGAAAGCCTACTTGGTGAAGATTCAGGTCAAGTGTTTAATTATAAAGAAGAAAATGAAATAGATGCATATTTAGGAGAGGGAGCCAAAACTACAATGGTAAAAGTTAAGGAAGAAGAAGAACTTGATGCTGATACAACTTGTCATCTAGACTCAATTCTTGACATGACAAACGATGAGGCCTTCCATTGGAATATTGACTCAGTGTTGTCACCAGCACAAGAAGAAAAGGAGCCTGTGGCTGATAGTAAAGAGGGAACAAAGAGAGACATATTTTTGAGACTAAACTATGAGGAGGTTATTACTGCTTGGGCTAGCCAAGGTTCTTCTCCATGGACAACAGGGAACCCTCCCAAGTTCAACCCTGATGATGACTGCTGGCCAAACTGCTTGGGTTCTAGTGGTGCAGATGGGGAAGTAAGAAGCTTAAGGGGGTACCTAGTAGGAGGTGGAGATTTGGGAAGAGAAGCAAGAGTATCCAGATATAGAGAGAAGAGAAGAACTCGTTTATTTGCAAAGAAGATAAGATATGAAGTGAGGAAGTTGAACGCAGAAAAGAGACCTAGGATGAAAGGTCGTTTTGTCAAGAGGACATGCTTTGTTGGGGCCAATGCTTTTCCAACTTACCACTGA 1194 0.4397 MITDMKGAGALGAKTARACDSCLRRRARWFCAADDAFLCHGCDTLVHSANQLASRHERVRLQTASSKITAHAWHSGFTRKARTPRHNKHLALQQQQRLKDQVLFNNTSILPLVPDLGVEEPQIDDEAEEQLLCRVPVFDPFDAEPCNIYNEQRLNPTIKKDAADEEEACDLESFSDFDVDLAEFAASVESLLGEDSGQVFNYKEENEIDAYLGEGAKTTMVKVKEEEELDADTTCHLDSILDMTNDEAFHWNIDSVLSPAQEEKEPVADSKEGTKRDIFLRLNYEEVITAWASQGSSPWTTGNPPKFNPDDDCWPNCLGSSGADGEVRSLRGYLVGGGDLGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRTCFVGANAFPTYH* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00218 397 Pfam CCT motif 342 384 IPR010402 GO:0005515
Rops2g00218 397 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 10 385 - -
Rops2g00218 397 ProSiteProfiles CCT domain profile. 342 384 IPR010402 GO:0005515
Rops2g00218 397 SMART bboxneu5 14 61 IPR000315 GO:0008270
Rops2g00218 397 CDD Bbox1_BBX-like 18 61 - -
Rops2g00218 397 ProSiteProfiles Zinc finger B-box type profile. 14 61 IPR000315 GO:0008270
Rops2g00218 397 Pfam B-box zinc finger 16 59 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00218 Rops-Chr2 3225961 3227508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00218 8 384 C2C2-CO-like Transcription Factor Family AT1G25440 43.437 2.33e-92 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Rops2g00218 zf-B_box 1.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00218 - - gmx:100812563 503.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00218 2 3225961 3227508 Rops5g00229 5 3530430 3532665 PCT