Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00210 ATGGAAGAAAACCTACCTCCAGGGTTCAGGTTCCATCCTACAGATGAAGAGCTCATCACATATTATTTATTAAGAAAAGTGTCAGATACTGGCTTCACATCTAAAGCTGTAGCAGTTGTTGATCTCAATAAGTCTGAACCTTGGGACCTCCCAGGTAAGGCTTCAATGGGAGAGAAGGAATGGTATTTCTTCAGCTTGAAAGATCGTAAGTATCCAACTGGGCTTCGAACCAACCGAGCCACCGAATCAGGGTATTGGAAAACCACAGGAAAAGATAGGGAAATTTTTGGTGCTGGAGTTTTGATAGGAATGAAGAAAACCTTGGTCTTTTATATGGGCAGAGCTCCCAGGGGTGAGAAAAGTAACTGGGTTATGCATGAATATAGGCTACAAAACAAGCATCCCTTTAGATCTTCCAAGGAAGAATGGGTGGTTTGCAGGATCTTCCAAAAGAGATCAGCACCCAAGAAACCACAGCAAACATCATCCCCTCAACCATCTCAAGAGTCCCCTTGTAATACAACCTCAATGGTCAATGAATTTGGTGATGTTGAGCTGCCAAATCTAAATAGTATAGCAAATTCATCCAGTGGCTTCACTGGACTAACTTACAATGGTGGTGATCCCAGTAATGTTAACACAAATATGAACTTGACCATGAATTGGCCAGCTTCAACTGAGGTTCCCTCTCTTCAATCTCTCCCATGGCCTTCTGGATTGCTGAATCCAAATCTTTCTGTGAATTCTTTGCTTCTCAAGGCATTGCAACTAAGGAGTTATCAGCAAAGAGAAGCTGCAGCCACTGATCACATATCAACATATATTCCTCAAGGATTTTCTCAACTTGGAACCGACCTGACCTCGAATCTCAGTGCTTCTTCTTCAAAAGTTTTAGAATGTATGCCACAGCAGCAGGAGCAACCATTCAATATGGACTCCATTTGGTGA 948 0.4241 MEENLPPGFRFHPTDEELITYYLLRKVSDTGFTSKAVAVVDLNKSEPWDLPGKASMGEKEWYFFSLKDRKYPTGLRTNRATESGYWKTTGKDREIFGAGVLIGMKKTLVFYMGRAPRGEKSNWVMHEYRLQNKHPFRSSKEEWVVCRIFQKRSAPKKPQQTSSPQPSQESPCNTTSMVNEFGDVELPNLNSIANSSSGFTGLTYNGGDPSNVNTNMNLTMNWPASTEVPSLQSLPWPSGLLNPNLSVNSLLLKALQLRSYQQREAAATDHISTYIPQGFSQLGTDLTSNLSASSSKVLECMPQQQEQPFNMDSIW* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00210 315 ProSiteProfiles NAC domain profile. 5 151 IPR003441 GO:0003677|GO:0006355
Rops2g00210 315 FunFam NAC domain-containing protein 100-like 14 155 - -
Rops2g00210 315 Gene3D NAC domain 14 155 IPR036093 GO:0003677|GO:0006355
Rops2g00210 315 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 220 - -
Rops2g00210 315 Pfam No apical meristem (NAM) protein 6 130 IPR003441 GO:0003677|GO:0006355
Rops2g00210 315 MobiDBLite consensus disorder prediction 154 178 - -
Rops2g00210 315 SUPERFAMILY NAC domain 3 151 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00210 Rops-Chr2 3148799 3151794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00210 1 315 NAC Transcription Factor Family AT3G18400 57.576 2.33e-117 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops2g00210 NAM 1.9e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00210 - - gmx:100787111 489.189