Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00205 ATGTCTACTTCAAAAAGCGTCAGCAGTTCAAGTGAAGATGATATTGAACTTAGAAGAGGGCCTTGGACTCTTGAAGAGGATAACCTGCTTGCCCAATACATTACTAGTCATGGAGAAGGGCGTTGGAATTTGCTGGCTAAACGTTCAGGATTGAAGAGAACAGGAAAAAGTTGCAGATTAAGGTGGCTAAATTATCTAAAACCAGATGTGAAGCGGGGAAATTTAACCCCAGAAGAACAGCTTTTAATTCTTGAACTCCACTCAAAGTGGGGAAACAGGTGGTCAAAAATTGCACAACATTTGCCAGGCAGGACTGACAATGAAATCAAGAACTATTGGAGAACTAGGATTCAGAAACAAGCAAGGCATTTGAAAATTGACACAGATAGCAAAGAGTTTCAAGAACTCATCAGGCGTTTCTGGATGCCAAGGTTGCTTCAGAAAGCTAAAGAATCATCTTCTTCAGCCATGTCAATCCAAAATCAGGCAAACCCTTTGCCTCCTGAGAGTTTTTCTCAGTATTCAACTATTGAGACAACACCAACCCAAATCCCTTGGCAAGGACCTTGTACCAATGAAACAGGTCCCAATTATTTGGATCAACATGAGCAGAACTCAGACTCTGATCACAACAATGGTTCATGCATCTCCTTTTCTGAGTCAGCAAATATCCATAAAGTGCCTCAGCATGTGGGATACACCACTAGTCAATTTCATGCATTGGATAACAATGACTTTGGCACCTTCACTTATGATGGCTACCAAGTAAATAACAATGACTATGAGATTGGCACCTTCAAAATGGCTACTGCAAGGGTAGCTGAGGATATGCAATACCCAGTTGGTGATTGTCAAATGGCAGAAAGCAATTGGGTAAACAATGATTTTGCATGTAGCATGTGGAACATGGATGAATTGTGGCAATTTAGTAACTTACAAAAATAA 945 0.4053 MSTSKSVSSSSEDDIELRRGPWTLEEDNLLAQYITSHGEGRWNLLAKRSGLKRTGKSCRLRWLNYLKPDVKRGNLTPEEQLLILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRIQKQARHLKIDTDSKEFQELIRRFWMPRLLQKAKESSSSAMSIQNQANPLPPESFSQYSTIETTPTQIPWQGPCTNETGPNYLDQHEQNSDSDHNNGSCISFSESANIHKVPQHVGYTTSQFHALDNNDFGTFTYDGYQVNNNDYEIGTFKMATARVAEDMQYPVGDCQMAESNWVNNDFACSMWNMDELWQFSNLQK* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00205 314 Gene3D - 19 71 - -
Rops2g00205 314 ProSiteProfiles Myb-like domain profile. 67 117 IPR001005 -
Rops2g00205 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 121 IPR017930 -
Rops2g00205 314 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 66 IPR017930 -
Rops2g00205 314 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 16 202 IPR044676 GO:0003700|GO:0006355|GO:0043565
Rops2g00205 314 Pfam Myb-like DNA-binding domain 72 115 IPR001005 -
Rops2g00205 314 Pfam Myb-like DNA-binding domain 19 66 IPR001005 -
Rops2g00205 314 FunFam MYB transcription factor 76 140 - -
Rops2g00205 314 Gene3D - 75 118 - -
Rops2g00205 314 MobiDBLite consensus disorder prediction 182 214 - -
Rops2g00205 314 CDD SANT 76 115 IPR001005 -
Rops2g00205 314 FunFam Myb transcription factor 19 71 - -
Rops2g00205 314 ProSiteProfiles Myb-like domain profile. 14 66 IPR001005 -
Rops2g00205 314 SUPERFAMILY Homeodomain-like 17 113 IPR009057 -
Rops2g00205 314 SMART sant 18 68 IPR001005 -
Rops2g00205 314 SMART sant 71 119 IPR001005 -
Rops2g00205 314 CDD SANT 21 66 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00205 Rops-Chr2 3098595 3099899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00205 14 309 MYB Transcription Factor Family AT1G68320 45.687 4.51e-78 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops2g00205 Myb_DNA-binding 6.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00205 K09422 - gmx:778042 548.51