Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00187 ATGGCTTTGTCATCATCATCATCCACTAAACAAATTGGTGGTCGAAGGTTGCTTTCAGATGGCTTCCCCTATTGGCTTTCAGCTTCAGATAGAAAGCTTCTTCAAACAGCACCAGTAAAAGCTGATATTGTGGTAGCACAAGATGGGACTGGGAACTATAAGACCATCTCAGAGGGTGTGGCTGCAGCTGCTAAGCTTAGTGGAAAAGGACGAGTTGTTGTTCACGTCAAAGCAGGTGTTTACCGAGAGAATGTCGATATCAAGAAGACAGTGAAGAACATAATGATTATTGGTGATGGGATGGGTGCCACTATTGTTACTGGTAATCATAACGCACAAGATTCCACTACTTTTCGTTCAGCTACTTTTGCGGTTGTGGGTGAAGGGTTCATTGCCAGGGACATAAGCTTTGAGAACACAGCAGGACCACAGAAGCATCAAGCGGTGGCTCTCCGTTCAGGCTCCAGTTTGCAGCTTTAA 480 0.4521 MALSSSSSTKQIGGRRLLSDGFPYWLSASDRKLLQTAPVKADIVVAQDGTGNYKTISEGVAAAAKLSGKGRVVVHVKAGVYRENVDIKKTVKNIMIIGDGMGATIVTGNHNAQDSTTFRSATFAVVGEGFIARDISFENTAGPQKHQAVALRSGSSLQL* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00187 159 PANTHER PECTINESTERASE 24 156 - -
Rops2g00187 159 SUPERFAMILY Pectin lyase-like 37 155 IPR011050 -
Rops2g00187 159 ProSitePatterns Pectinesterase signature 1. 68 87 IPR018040 -
Rops2g00187 159 Pfam Pectinesterase 42 156 IPR000070 GO:0030599|GO:0042545
Rops2g00187 159 Gene3D - 36 158 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00187 Rops-Chr2 2863288 2864276 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00187 15 159 Carbohydrate Esterase AT1G23200 61.842 3.41e-56 182
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00187 - - gmx:100775898 259.225