Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00163 ATGCATGGAAGGAACAACCAAAAAACGGTGCTGGGAGCTTTTGCTGTCCATGTCCCTTCAGCCTCTCTAAGTTTTTTCCTTCACTTGAAAGGAGAACTTGGCTTCCTTGTAAGTGTGGCTCTCGAACACATGTATACCATGACCTGCAAGAAGAGGTGGCGAATGGCCTTTACTGCCATCTATTTCATCAAGGCTCTCTGTATTATGTCAAAAAAAGCAGTTGACAAGAAAGCTCCGAGGCTCATGCTCTTCTCATCATACTTGGCCATTGATGTGCAGCCAGAGACAGAACAAGAACATGAACATGAACATGAACATGAGCACTCCCTGGAAATCAAATCCCTCCACCTCCAGATCGTTGATGTTGATACCAAACTTCTCTCAGACATGGTAAGGGAGAAAAGCATGGAATCTCTGACGCAGTTTGGAGGCGTAAAACAAGTGGCTGCATTTCTTCAAACTGACGTGAAGCAGGGCATCATAGATAACCTGACTGATCTTCATCACAGAAAGCATGTCTATGGTGTCAACGTTTTCCAGAGACCCACTGCCAAAGGATTTCTTCCTTTCATACTTGAAGCATTCAAAGATACCATGGTTTTTCTAAATTTGATAATGGTTGTGCCCTCACTGTGCTTTGGTATTCAGCAATATGGCTGGAAAAATGGATGGCATGACGGTGGAAGTACTGTCTTGGCGGTTGTTTTGATGGTTGTCATTTCAGCTGTATGCAACTTTAAGCAGTATAAACACTTTGAGGAGCTTTCGGCAAAGAGCAGTGACATAAGGGTTGAAGTAGTGAGAGGTGGTCGATGCCAAACCATATCCATGAAGACTGGTGACCAGATTCCAGCGGATGGCTTGTTCTTGGAAGGATATTCCTTGAAGGTGGATGAGTCCAGTGTGACAGGCCAAAGCGGTCATGTCCATGTCGATGAAAATAGTAACCCATTTTTGCTCTCTGGAACAAAGGTGAATGATGGTTTTGCCTACATGCTTGTTACCTCTGTGGGTATGAACACTGCTTGGGGTGAATTGATGAGTTCGGATACTCGAGACTCAGTTGTGCAGCAGACGCCTTTGCAAGTAGGTCTCAACAAGTTGACTTCTGACTTAGGGAAGGTTGGGTTGCTGCTAGCTGCTCCTGTTGTATTTGTTCCATTAATCCGATATTTCACTGGAGAATTCGACAGAAGCAAGTTTGATGATACAATGAATGCAATTATAGGAAATTTTGGTGCTGCCCTCACAATTGTAGAGTTGGCCACTCCGGAGGGTTTGCTTCTACATGTTACTCTAACTCTGGTTTATTCCATGAAGAAAATGATGAGAGATAATGGCATGATTCGGGAACCCGTTGCTTGTGAGATATTAGGATCAGTAACAACAATCTGCACGGATAAAACAGGCACCCTTACATTAAACGAGATGAAGGTCACAAAGGTTTGGGTGGGGGAACAAACAGTAACAGCATGTGGTCATTTGGCACCAAATCTACTCCAATTGCTGAAAGAAGGAATTGCTTTAAATACGACTGGCAGCATTTACCAACCCCCATCCACTTTGCTTCCTGAAGTATCGGGCAGTTCAACTGAGAAAGCACTGCTTTCCTGGGCTGTGCAGGATTTGGGCATGAATATTGATGAATTGAAGCAACACTATAAAATAATTCATATGGAGACCTTCGACTCTAAGAAGAAGAAAAGTGGGATTCTGATGAGGGACAACAGAGGAAGCAAAATTTATACACATTGGAAGGGAGCCGCTGAGACAATACTGGCAATGTGTTCAGATTATTATGGTCAAACAGGGGAAATCATGATCATGGATGCCAAAAAAAAAGTTCAAATTGACAACATTATCAGGAGTATGGCAGCTGAAAGCTTGCGATGTGTGGCCTTTGCCCAAAAGAGCTGCACAGAGGATAATGGGCAGCCTGAAGAGTCAGGAATGGTATTGATAGGGATACTTGGATTAAAAGACCCTTGTAGGCCAGGAGTTAAAGCAGCAGTTGAATTATGCAAGAACCTCGGAGTGAAGATAAGGATGATTACAGGAGATAATGTGCATACTGCAAGGGCCATAGCCTCTGAATGTGGGATTCTTCCTCCTTATGAACAATTGGATGAAGAAGCAGTGGTTGAAGGCTATCAATTCAGAAACTACTCAGATGAGGAAAGAATGGATAAGATTGACAAAATCCGAGTTATGGCCAGATCATCTCCGGATGACAAGCTTCTAATGGTTCAATGTTTAAAGCAGAAGGGTCATGTGGTAGCAGTTATAGGTGATGGCACAAATGATGCGCCTGCACTAAAAGAGGCCGATATTGGAATTTCCATGGGAATAGGAGGAACTGAAGTGGCAAAGCAGAGCTCAGATATTGTCATCCTGGATGACAATCTCACTTCTGTGGTAAAAGTACTATGGTGGGGAAGGTGTGCATGCTCTAACATTCAAAAGTTCATTCAGTTCCAACTTACACTTAATATTTCTGTAGTTGTCATCAACTTTGTAGCCGCAGTCTCTTCTGTCAAAGTCCCACTAACAAACGTCCAGCTATTGTGGGTAAACCTGATCATGTATGCTCTCGGAGCTTTAGCCTTGGCCACTGAGCAACCCACTGTTGATCTCAGGGAGATGCCACCTGCCGTTCGATTTGAGCCACTTATAACTAAATTTATGTGGCAAAACCTCATTGCACAGGCATTGTATCTAGTGACTGTAGTATTGATTTTACTATTCAAGGGAAGATCGGTGTTTCATGTCAATGAAGAGGTGAGGGATACCCTTATGTTTAATGTGGTTGTCTTCTGCCAATTCTTTAATGACTTCAATGCAAGTAAGCATGAGAAGAAGAACATCTTCCAGGGACTTGCTAATAATTGGCTGTTCATAGCAACAGTGGGCTTAACCTTGGCTGTTCAGCTAGTGATGGTTGAGTTTCTGAATAAGTTCGCCAATACTGGGAGATTGACATGGGAGCAATGGGGTATTTGCATTGGCTTAGCAGCTTTGTCTTGGCCAGTTGGTCTACTCTTCAAGTGTATCCTAGCTATTCTTGGCAAAGCATAG 3075 0.4325 MHGRNNQKTVLGAFAVHVPSASLSFFLHLKGELGFLVSVALEHMYTMTCKKRWRMAFTAIYFIKALCIMSKKAVDKKAPRLMLFSSYLAIDVQPETEQEHEHEHEHEHSLEIKSLHLQIVDVDTKLLSDMVREKSMESLTQFGGVKQVAAFLQTDVKQGIIDNLTDLHHRKHVYGVNVFQRPTAKGFLPFILEAFKDTMVFLNLIMVVPSLCFGIQQYGWKNGWHDGGSTVLAVVLMVVISAVCNFKQYKHFEELSAKSSDIRVEVVRGGRCQTISMKTGDQIPADGLFLEGYSLKVDESSVTGQSGHVHVDENSNPFLLSGTKVNDGFAYMLVTSVGMNTAWGELMSSDTRDSVVQQTPLQVGLNKLTSDLGKVGLLLAAPVVFVPLIRYFTGEFDRSKFDDTMNAIIGNFGAALTIVELATPEGLLLHVTLTLVYSMKKMMRDNGMIREPVACEILGSVTTICTDKTGTLTLNEMKVTKVWVGEQTVTACGHLAPNLLQLLKEGIALNTTGSIYQPPSTLLPEVSGSSTEKALLSWAVQDLGMNIDELKQHYKIIHMETFDSKKKKSGILMRDNRGSKIYTHWKGAAETILAMCSDYYGQTGEIMIMDAKKKVQIDNIIRSMAAESLRCVAFAQKSCTEDNGQPEESGMVLIGILGLKDPCRPGVKAAVELCKNLGVKIRMITGDNVHTARAIASECGILPPYEQLDEEAVVEGYQFRNYSDEERMDKIDKIRVMARSSPDDKLLMVQCLKQKGHVVAVIGDGTNDAPALKEADIGISMGIGGTEVAKQSSDIVILDDNLTSVVKVLWWGRCACSNIQKFIQFQLTLNISVVVINFVAAVSSVKVPLTNVQLLWVNLIMYALGALALATEQPTVDLREMPPAVRFEPLITKFMWQNLIAQALYLVTVVLILLFKGRSVFHVNEEVRDTLMFNVVVFCQFFNDFNASKHEKKNIFQGLANNWLFIATVGLTLAVQLVMVEFLNKFANTGRLTWEQWGICIGLAALSWPVGLLFKCILAILGKA* 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00163 1024 Pfam E1-E2 ATPase 274 444 - -
Rops2g00163 1024 Gene3D - 462 807 IPR023214 -
Rops2g00163 1024 ProSitePatterns E1-E2 ATPases phosphorylation site. 467 473 IPR018303 -
Rops2g00163 1024 FunFam Calcium-transporting ATPase 656 807 - -
Rops2g00163 1024 Pfam haloacid dehalogenase-like hydrolase 461 776 - -
Rops2g00163 1024 Pfam Cation transporter/ATPase, N-terminus 143 204 IPR004014 -
Rops2g00163 1024 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 471 667 IPR023299 GO:0000166
Rops2g00163 1024 SFLD p-type atpase 449 814 IPR044492 -
Rops2g00163 1024 PRINTS H+-transporting ATPase (proton pump) signature 762 778 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops2g00163 1024 PRINTS H+-transporting ATPase (proton pump) signature 617 635 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops2g00163 1024 PRINTS H+-transporting ATPase (proton pump) signature 794 819 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops2g00163 1024 SUPERFAMILY Calcium ATPase, transmembrane domain M 143 1018 IPR023298 -
Rops2g00163 1024 Gene3D - 193 1010 - -
Rops2g00163 1024 PANTHER CATION TRANSPORTING ATPASE 119 1017 - -
Rops2g00163 1024 Pfam Cation transporting ATPase, C-terminus 847 1016 IPR006068 -
Rops2g00163 1024 NCBIfam calcium-translocating P-type ATPase, PMCA-type 110 1017 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Rops2g00163 1024 NCBIfam HAD-IC family P-type ATPase 733 845 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Rops2g00163 1024 Gene3D - 167 352 - -
Rops2g00163 1024 Gene3D - 475 662 IPR023299 GO:0000166
Rops2g00163 1024 FunFam Calcium-transporting ATPase 779 1020 - -
Rops2g00163 1024 SUPERFAMILY HAD-like 463 866 IPR036412 -
Rops2g00163 1024 ProSitePatterns Hypothetical cof family signature 2. 762 784 - -
Rops2g00163 1024 PRINTS P-type cation-transporting ATPase superfamily signature 465 479 - -
Rops2g00163 1024 PRINTS P-type cation-transporting ATPase superfamily signature 677 687 - -
Rops2g00163 1024 PRINTS P-type cation-transporting ATPase superfamily signature 762 781 - -
Rops2g00163 1024 PRINTS P-type cation-transporting ATPase superfamily signature 786 798 - -
Rops2g00163 1024 PRINTS P-type cation-transporting ATPase superfamily signature 655 666 - -
Rops2g00163 1024 PRINTS P-type cation-transporting ATPase superfamily signature 298 312 - -
Rops2g00163 1024 SUPERFAMILY Calcium ATPase, transduction domain A 265 347 IPR008250 -
Rops2g00163 1024 SFLD C1.7: P-type atpase like 449 814 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00163 Rops-Chr2 2360905 2363979 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00163 49 1017 Primary Pumps ATPases AT3G63380 54.162 0.0 1033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00163 K01537 - gmx:100784119 1242.25