Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00140 ATGCTTACAAGAAGAAAATTCCTCAAATTGTTCTCAACTCCCAACGTTTATCAACTAATTTCTCACCATGTTAATGCAGTTCCAGAGCCATTACACCCTTTTTCCGAAATTCCGAAAAATTTTAGGGTTTATGGAACACAAGCATCGAAATTTCCAGAATATGAGATGCCATCTGTTACATGGGGAGTGATTCAGGGTCGCAAAGAGAAGCTCGTTTCTCGTGTAATCATCTTCGATTACCTCAAGGGTTTGGGAATCATCCCTGATGAGTTGCAGGACTTGGAGCTTCCTTCCACTGTTGAAGTCATGAGGGAACGCGTCGAGTTTCTTCACAAATTGGGTCTCACTGTTGATGACATCAATGAATACCCTTTGATGCTTGGATGCAGTGTGAGAAAGAACATGATTCCTGTGTTGGGTTACTTGGAAAAAATTGGAATTTCAAGGTCCAAGCTTGGTGAGTTTGTTAAGAGTTACCCACAAGTTTTGCATGCTAGTGTCATTGTTGAGCTTGCTCCCGTTGTTAAATTCATTAGAGGACTTGATGTGGAGAGAGAAGATATTGGGTATGTGCTGCAAAAATATCCTGAGCTTCTTGGTTTCAAGCTTGAGGGTACTATGAGTACTTCAGTGGCTTATCTTGTTAGTATTGGTGTTAATCCTAGAGATATTGGTCCAATGGTTACACAGTATCCTTATCTTTTGGGTATGAGAGTTGGGACTATGATAAAGCCTTTGATTGATTACTTGATCACTTTGGGGTTGCCAAGGAAGATTATACCTAGGATGTTGGAGAAGAGAGCATATTTACTTGGGTATGATCTTGAAGAGACTGTGAAACCAAATGTGGATTGTTTGATCAGTTTTGGTATAAGGAGAGAATGTTTGCCTTCTGTTATTGCTCAATATCCTCAGATTCTTGGGCTGCCTCTTAAGGCTAAATTGTCTTCACAGCAGTACTTTTTTAGTTTGAAGCTTAAGATTGATCCTGAAGGGTTTGCAAGAGTGGTGGAGAAGATGCCACAGGTGGTTAGCCTTCACCAAAATATGATTATGAAGCCAGTCGAGTTCCTTCTTGGTAGGGCAATACCATCACAGGATGTGGCTAGTATGGTGATCAAGTGTCCTCAGTTGGTCGCACTGCGAGTTGAGCTCATGAAGAACAGTTTTTTCTTCTTCAAGAGTGAGATGGGGAGACCTATAAAAGAGCTTGTGGAGTTCCCAGAATACTTTACTTATAGTTTGGAATCCAGGATTAAACCCAGATACCAGCGGCTAAAGAGCAAGGAAATAAGGTGTTCATTGAATTGGATGTTAAATTGTAGTGACCAGAGATTTGAAGAGAGATTGCAGGGTAATTACATTGAAACTGAAAGTGTAGGTCCTTCATTCTGTGTGGGTGGGAAATTAGAGCTACCAGGGAATGCGATAGTGTCAGATGAGGAAGAGGAGAGTGATGATGAAATACTATACAGACGAACTGTTTCTCTGTAG 1494 0.409 MLTRRKFLKLFSTPNVYQLISHHVNAVPEPLHPFSEIPKNFRVYGTQASKFPEYEMPSVTWGVIQGRKEKLVSRVIIFDYLKGLGIIPDELQDLELPSTVEVMRERVEFLHKLGLTVDDINEYPLMLGCSVRKNMIPVLGYLEKIGISRSKLGEFVKSYPQVLHASVIVELAPVVKFIRGLDVEREDIGYVLQKYPELLGFKLEGTMSTSVAYLVSIGVNPRDIGPMVTQYPYLLGMRVGTMIKPLIDYLITLGLPRKIIPRMLEKRAYLLGYDLEETVKPNVDCLISFGIRRECLPSVIAQYPQILGLPLKAKLSSQQYFFSLKLKIDPEGFARVVEKMPQVVSLHQNMIMKPVEFLLGRAIPSQDVASMVIKCPQLVALRVELMKNSFFFFKSEMGRPIKELVEFPEYFTYSLESRIKPRYQRLKSKEIRCSLNWMLNCSDQRFEERLQGNYIETESVGPSFCVGGKLELPGNAIVSDEEEESDDEILYRRTVSL* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00140 497 FunFam Transcription termination factor mterf4, chloroplastic 103 240 - -
Rops2g00140 497 Pfam mTERF 139 447 IPR003690 GO:0003690|GO:0006355
Rops2g00140 497 FunFam Transcription termination factor MTERF4, chloroplastic 241 455 - -
Rops2g00140 497 Gene3D Transcription termination factor 3, mitochondrial 244 457 IPR038538 -
Rops2g00140 497 Gene3D Transcription termination factor 3, mitochondrial 103 243 IPR038538 -
Rops2g00140 497 SMART mt_12 297 329 IPR003690 GO:0003690|GO:0006355
Rops2g00140 497 SMART mt_12 401 432 IPR003690 GO:0003690|GO:0006355
Rops2g00140 497 SMART mt_12 261 292 IPR003690 GO:0003690|GO:0006355
Rops2g00140 497 SMART mt_12 334 364 IPR003690 GO:0003690|GO:0006355
Rops2g00140 497 SMART mt_12 117 148 IPR003690 GO:0003690|GO:0006355
Rops2g00140 497 SMART mt_12 225 256 IPR003690 GO:0003690|GO:0006355
Rops2g00140 497 SMART mt_12 153 184 IPR003690 GO:0003690|GO:0006355
Rops2g00140 497 SMART mt_12 369 400 IPR003690 GO:0003690|GO:0006355
Rops2g00140 497 SMART mt_12 189 220 IPR003690 GO:0003690|GO:0006355
Rops2g00140 497 PANTHER CGI-12 PROTEIN-RELATED 138 270 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00140 Rops-Chr2 2108063 2109821 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Rops2g00140 mTERF 3.9e-106 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00140 K15032 - gmx:100809590 842.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00140 2 2108063 2109821 Rops5g00306 5 5232038 5233738 PCT