Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00137 ATGGCTAATTTGCAAACGGTGCCCATTGAACAAGTGTTTCCCGATCAATTCCCGGTTGGTGTCAGGGTTCTTGTGGTTGATGATGACATAGCTGTCCTTAAAGACATTGAACAAATGTGTAATCGATGCCATTATCAGGTTACCACATGTTCTGAGGCAAGAGTTGCTTTGAATCTTTTGTGGGAAAGAAGTGGTTGTTTTGATGTGATACTGAGTGATGATCATATGCCAGACATACATGAATTTCTTCAGCATGTACACAAGATGAATATTCCCTTTGTTGTGATGTCTGATAATTATGCAACAAATGCTCTCATGGAGAGTCTCAAACTTGGGGCTTGTAATCATTGGACTAAGCCTTTGCGGTATGAACAAATCAAGAATATATGGCAGCATGCTATAAGGAAATCCTTAAATAAAGATGAACAGCAAGAAAAAATTGGCAACTTGGAAGATGAAGGTAGCAAAAAACGGAGGAAAGATGATTCAGAATTTTCTTCTTCCGATGTTAATAATGCAACTGAAGGAGTCATTAATGCCCCAAACGAGAGTGATTTAAAAGAAGTTGATGTTTTTGATGATTATCCACCCTCCCTTAAGAAGCCCCGTGTAGTGTGGACACCAGAACTGCATGAAGAATTTGTCAGGGCTGTGATGCAAATCGGGCTTGATAAGGCTGTGCCAAAGAAAATTCTTGAAGGGATGAATGCTCCTAATTTGACAAGAGCGAATATTGCTAGCCATTTGCAGAAATATAGAAATTATTTGAAGAAATTAGAGACACAGCAACAGAATGGAATGCCAAAAGCCATCCCTGGGACTATAGAATCTCAGCTGAGTGCATCTGGAGGATTTGACTTTCAAGCTTTTTCTACTGCTGAACATGTTCCCCAAGAAACACTGGCAGGCTTTCACCCTGAGCTCATACGTTGCCAAAACAATTTGATGCCAAGAGAGGACCAAACTGCCCTACAGAAACCATCCATACAGTGGCCTAACCATCCCCATGCAGAACAATATGCTATGGCATATGGCCATCCTCTAGCAAATTATCCTTCTAACATTGCCATGAATTTTCCTCAGTCCAACATAACCTTACATGATGCATCATCAAGATATGGAGCATGGCCACCATCTAATACAATTGCTTCAGTTGTAGTCAACAACAGTACTGGAAATTTGGGTCTTCAGAGAAATAATGTGCTGATGATGAATACTTTGCAGCAGCAGTCACTGATGCACCATCAAATTCATCCAGTCAACGTTCAAACATCTTGTTTGGGGGTTTCTGGAACTTTAGAGGAGGGAAATAGTCATGCTTCTGTCAACCATAATTGCAGGTTTGGCAGGAATTATCTTGGTGAATATAGCATACTACCACCTCAATCAAATAATCCATTTGGTGTAGCTCAGCTCCCTGGTGAAAACACCAAAGCTAGAGACATTTTCTTTGGGTGCAATCCTCCAGCCTCCACTTCTCCTCCTCCAACATTCTCTAGTTCAATGACTCAGCAGCTTCAAAACTCAACTTTGGCAATTGGTGCTTTGAGATCTTCTCCAGGTCTTTCACTGGCATGTGAGACACAAGTTCCCTATGGTTCTAAATCCGGTGATTCACATTATCAAGCATATATTGATGATGACAAGACAAAGGAGGAGCCTAATTCTATAAATAGTCCACAAGAGGATCACCCAGTTTCACAAAGATATCCATCATGA 1719 0.4084 MANLQTVPIEQVFPDQFPVGVRVLVVDDDIAVLKDIEQMCNRCHYQVTTCSEARVALNLLWERSGCFDVILSDDHMPDIHEFLQHVHKMNIPFVVMSDNYATNALMESLKLGACNHWTKPLRYEQIKNIWQHAIRKSLNKDEQQEKIGNLEDEGSKKRRKDDSEFSSSDVNNATEGVINAPNESDLKEVDVFDDYPPSLKKPRVVWTPELHEEFVRAVMQIGLDKAVPKKILEGMNAPNLTRANIASHLQKYRNYLKKLETQQQNGMPKAIPGTIESQLSASGGFDFQAFSTAEHVPQETLAGFHPELIRCQNNLMPREDQTALQKPSIQWPNHPHAEQYAMAYGHPLANYPSNIAMNFPQSNITLHDASSRYGAWPPSNTIASVVVNNSTGNLGLQRNNVLMMNTLQQQSLMHHQIHPVNVQTSCLGVSGTLEEGNSHASVNHNCRFGRNYLGEYSILPPQSNNPFGVAQLPGENTKARDIFFGCNPPASTSPPPTFSSSMTQQLQNSTLAIGALRSSPGLSLACETQVPYGSKSGDSHYQAYIDDDKTKEEPNSINSPQEDHPVSQRYPS* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00137 572 PANTHER TWO-COMPONENT RESPONSE REGULATOR 21 332 IPR045279 GO:0009736
Rops2g00137 572 MobiDBLite consensus disorder prediction 541 558 - -
Rops2g00137 572 Pfam Myb-like DNA-binding domain 203 253 IPR001005 -
Rops2g00137 572 Gene3D - 21 154 - -
Rops2g00137 572 CDD REC_typeB_ARR-like 23 134 - -
Rops2g00137 572 Gene3D - 199 260 - -
Rops2g00137 572 SUPERFAMILY Homeodomain-like 199 258 IPR009057 -
Rops2g00137 572 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 200 257 IPR017930 -
Rops2g00137 572 MobiDBLite consensus disorder prediction 531 572 - -
Rops2g00137 572 Pfam Response regulator receiver domain 23 128 IPR001789 GO:0000160
Rops2g00137 572 NCBIfam myb-like DNA-binding domain, SHAQKYF class 201 254 IPR006447 GO:0003677
Rops2g00137 572 FunFam Two-component response regulator 198 260 - -
Rops2g00137 572 SUPERFAMILY CheY-like 21 150 IPR011006 -
Rops2g00137 572 MobiDBLite consensus disorder prediction 141 180 - -
Rops2g00137 572 ProSiteProfiles Response regulatory domain profile. 22 134 IPR001789 GO:0000160
Rops2g00137 572 SMART REC_2 21 130 IPR001789 GO:0000160
Rops2g00137 572 MobiDBLite consensus disorder prediction 141 166 - -
Rops2g00137 572 Coils Coil 133 160 - -
Rops2g00137 572 Coils Coil 245 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00137 Rops-Chr2 2077197 2079621 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00137 15 301 Response Regulator Gene Family AT5G58080 39.175 7.03e-52 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Rops2g00137 Response_reg 5.8e-11 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00137 - K14491 pcin:129311779 486.493