Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00126 ATGTTGGGAAATCATTGTTCTAATGTTATGTCTGTTCCCTCAACCAAGCATGATGTGTTCCTCAGCTTTAGAGGGGAAGACACCCTCAACGGTTTCACTAGTCATCTTTATGCTGCTTTATGCAATAAAAAGATTAAGACTTATATGGATGATAGATTTGGTGAAGGAAATGAGATTTCACCAACACTGCGGGAAGCAATAGAGGAATCAAATATTTATGTCATCATTTTCTCCCAACACTATGCTTCTTCAATGTGTTGTTTGAATGAACTCACAAAGATACTCGAGTGTAAGCACAGATATGGAAGGGTTGTGATACCAGTTTTCTATAAGGTTGATCCATCAAATGTTAGGAATCAAAGAGGGAGTTATGAAGATTCGTTTGTTAAGCACGAGCAACTATTTAAGGACAAAGTGAAGAGCTGGAAGGGTGCTCTAACTGAAGCAGCTGGATTACCGGGTTGGGGTTCAAAAAGAATCAGAGAAATTGTTCAAGATATTTCGAGAAAATTGATGAAGTGTTCTTCCACAATTGATTATCAAGGACTGGTTGGAATTCACAAGCATATTGCACAAATCCACTCCCAGTTACATGTTGAGTCAGCAGCCATTCGGATCATAGGAATTTGGGGCGTTGGTGGAATAGGCAAGACAACAATTGCAGGTGCAGTATATCATAAACTGGCAACCCAATTCAGTGCCAGCAGCTTTGTTGTAAATGTTCATGAAGAAATAGAAAGATATGGATTACACCATGTACAAAACAGATATTTATCAGAGCTTCTAGGGGAAGAAAACACTTCCTCTAGTTTACGTTTCTCAGATGAAAGGGTTAAGCATGCAAAGGTTCTCCTTGTTCTTGATAATGTCAACCATTCAGGTGAAATTAAAGATTTAACTGGAGGGCGTGGTAGGTATGGCCCGGGAAGTAGAATCATTGTGACTAGTAGAGACATGCAAGTGCTAAAGAATGCTGAAGTTGATGAAGTATACGAGGTATTGAATTATGCCAGAGGGATTCCGTTAGCTCTCAAAGTTTTGGGCTCAATGCTTTATGGCAGAACAAAGGAAGAATGGGAAAGTGTATGTGTATTGGAAAAGCTTGAAAAGATTCCCGATCTTGACACATTTAATGTGTTGAAATTAAGTTATGATGGACTTGATAATGAACAGAAGGATATATTTCTTGACATAGCTTGTTTCTACAGAGGACATGATATGAATACCATAAAACAAGCATTAGATAGCTGTGGTTACTCTGCTGACACTGGAATGAGAGCTCTCATTGATAGGGGCCTTATATCTGTTTTGAAAGGTGAAATTGTGATGCATGATCTAATACAGGAAATGGGGCAAGAAATTGTTGGCCAACAATGTGGGACAGATGTTGTACAATGTATATTCCTTGACATGTGCCAAATCAAAGAAGATCAACTACATGCGGGTGCTTTTAAAATGATGCATAATCTGAGATTTCTCCAGATCTATAAGTCTAAATCAACTGAAGAATCAAAAGTTTACATTCCTGAATTTCTTGAAAGTCTTCCAGATGCTTTAAGATTTCTTTGTTGGGATGCCTTCCCTAAAAGATCATTGCCTCTGGACTTCCACCCAGAAAATCTTGTTGAACTTGATATGCGTGACTCTCAACTTGAACAACTTTGGCACAGAGATCAGCAATTACCGAATTTGAAAAGGCTTAACCTTAGTGGTTCTCGGAACCTGATTCAGATACCAGACCTCTCTCAATGCCCAAATATTGAAGAAGTAATTCTTAGTCATTGCATAGAGTTGGTTCAAGTTTACTCTTCTAGTTTCCTCAGCAAGCTCAACTGTTTATGGTTAAATGGGTGTGCTATGCTTAGGAGTTTAAATGTCCCTAGCAATATTCTTTCTAAATCTTCTGGATTAATAGTTCTCTATGATTGTTGCAACCTTGAGATGTTTTCAATCAATGATATCAACATGGGGGCTCTATTAAATAGTTGTTCCCGTAGTAGATCATTTGAGAGTATATTCAGAAACAGTTTGCCCGGGGAAATAATCCGTTGTTATAGAGATACAAGAACAAGTAGTAATGGCAAAGCGGGTCAACCCACCCCGTCATCAATCCGCCAAAAAAGGGGCAGACAGGGTGGGTCAACCCGTTTTCAAGTAACAGGTTGTCTAGGTGAACCCACCCCGTTTAAGGGTGGGTTGGCGGGTTGA 2208 0.3918 MLGNHCSNVMSVPSTKHDVFLSFRGEDTLNGFTSHLYAALCNKKIKTYMDDRFGEGNEISPTLREAIEESNIYVIIFSQHYASSMCCLNELTKILECKHRYGRVVIPVFYKVDPSNVRNQRGSYEDSFVKHEQLFKDKVKSWKGALTEAAGLPGWGSKRIREIVQDISRKLMKCSSTIDYQGLVGIHKHIAQIHSQLHVESAAIRIIGIWGVGGIGKTTIAGAVYHKLATQFSASSFVVNVHEEIERYGLHHVQNRYLSELLGEENTSSSLRFSDERVKHAKVLLVLDNVNHSGEIKDLTGGRGRYGPGSRIIVTSRDMQVLKNAEVDEVYEVLNYARGIPLALKVLGSMLYGRTKEEWESVCVLEKLEKIPDLDTFNVLKLSYDGLDNEQKDIFLDIACFYRGHDMNTIKQALDSCGYSADTGMRALIDRGLISVLKGEIVMHDLIQEMGQEIVGQQCGTDVVQCIFLDMCQIKEDQLHAGAFKMMHNLRFLQIYKSKSTEESKVYIPEFLESLPDALRFLCWDAFPKRSLPLDFHPENLVELDMRDSQLEQLWHRDQQLPNLKRLNLSGSRNLIQIPDLSQCPNIEEVILSHCIELVQVYSSSFLSKLNCLWLNGCAMLRSLNVPSNILSKSSGLIVLYDCCNLEMFSINDINMGALLNSCSRSRSFESIFRNSLPGEIIRCYRDTRTSSNGKAGQPTPSSIRQKRGRQGGSTRFQVTGCLGEPTPFKGGLAG* 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00126 735 Gene3D Ribonuclease Inhibitor 457 684 IPR032675 -
Rops2g00126 735 Gene3D - 174 331 IPR027417 -
Rops2g00126 735 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 398 IPR027417 -
Rops2g00126 735 Pfam TIR domain 16 186 IPR000157 GO:0007165
Rops2g00126 735 Pfam Leucine Rich Repeat 540 555 IPR011713 -
Rops2g00126 735 MobiDBLite consensus disorder prediction 689 717 - -
Rops2g00126 735 PRINTS Disease resistance protein signature 206 221 - -
Rops2g00126 735 PRINTS Disease resistance protein signature 559 575 - -
Rops2g00126 735 PRINTS Disease resistance protein signature 337 351 - -
Rops2g00126 735 SMART till_3 16 152 IPR000157 GO:0007165
Rops2g00126 735 SUPERFAMILY Toll/Interleukin receptor TIR domain 13 155 IPR035897 -
Rops2g00126 735 FunFam Disease resistance protein (TIR-NBS-LRR class) 13 176 - -
Rops2g00126 735 Gene3D - 12 173 IPR035897 -
Rops2g00126 735 Pfam NB-ARC domain 188 328 IPR002182 GO:0043531
Rops2g00126 735 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 646 IPR044974 GO:0006952
Rops2g00126 735 ProSiteProfiles TIR domain profile. 15 171 IPR000157 GO:0007165
Rops2g00126 735 SUPERFAMILY L domain-like 442 658 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00126 Rops-Chr2 1900094 1902264 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00126 14 660 WRKY Transcription Factor Family AT4G12020 31.139 9.82e-92 312
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00126 - - aip:107633930 861.292