Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00111 ATGGGTCTTAGCTTGAAGATGCAGAGCCACCACCGTTTGGCTTTGAGGGTACACGAGCAAACTGGGAGCAATAGAAAATACACTTTCATTCAGGCCCACAGAGCTTGGCTTCCGAAGTTTTTGCTGCTGTGGATCTTGTTGATGGCTCTAATTGGTTGGTGCATCTACAGTAAAATGGATGCTGACACTAAAGTTAGAAGGAAAGAGGTGTTGGGTAGCCTCTGTGATCAAAGGGCAAGAATGCTGCAAGACCAATTCAGTGTTAGTGTCAACCATGTCCATGCCCTTGCCATCCTTGTCTCAACCTTTCATTACTACAGAAACCCTTCTGCCATAGACCAGGAAACCTTTGCAGAATATACGGCTAGGACAGCATTTGAAAGGCCATTAATGAGTGGGGTGGCCTATGCACAAAGAGTGGTTAACTCGGAGAGAGAAAAATTTGAGAAGCAACATGGATGGGTTATAAAGACAATGGAAAGAGAGCCTTCACAGATTAGGGATGAGTATGCACCGGTGATATTTGCACAAGAAACTGTCTCTTACCTTGAATCCATTGATATGATGTCCGGGGAGGAGGACCGAGAGAACATTTTGAGGGCTAGAGCCACTGGGAAAGCTGTTCTGACTAGTCCTTTCAGGCTGTTGGGTTCTCATCATCTTGGTGTGGTTTTAACATTTCCTGTTTACAAATCTAAGCTCCCTTCAGAGCCAACAACTGAACAGCTCATTAAAGCAACAGCAGGATTTGTTGGAGGATCCTTTGATGTTGAGTCCCTTGTGGAGAATTTACTTGGTCAGCTTGCTGGTAACCAAGCAATTTTGGTGAATGTATATGATATCACAAACTCCACTGATCCCCTAATCATGTATGGCAACCATTCTGAAGAAGGCGATACATCTCTTGTCCATAAAAGTAAGCTTGATTTTGGAGATCCATACAGGAAACATCAAATGATATGTAGGTATCACCAGAAGGCACCAACAAATTGGATAGCAATTACCACGGCATTCCTATTCTTTGTGATTCTTTTATTAGTGGGTTACATTTTATACGGTGCTGGAAATCATATAGTCAAAGTAGAGGATGATTTCCATGAAATGCAGGAATTAAAAGTTAGAGCAGAAGCAGCTGATGTTGCCAAGTCACAGTTTCTAGCTACTGTCTCTCATGAAATTAGAACACCCATGAATGGCATTTTAGGAATGCTTGCTCTGCTTTTACACACAGAATTGAATTCAACCCAACGAGATTATGCTCAGACTGCTCAACAATGTGGGAAGGCACTGATAGCATTAATAAATGAGGTCCTTGATCGAGCCAAAATTGAAGCTGGCAAATTAGAGCTGGAAGCAGTTCCATTTGACCTTCGATCCATACTTGATGATGTTCTTTCTCTCTTCTCTGAAAAGTCTAGACACAAAGGTTTAGAGCTGGCAGTGTTTGTTTCTGATAAAGTTCCAGATATTGTTATGGGAGATCCTGGAAGATTCAGACAAATAGTAACTAATCTTGTTGGCAACTCTGTTAAATTCACCGAGCGAGGACATATATTTGTTAAAGTCCACCTATCTGAGAATAGAAAATCCACAATGAATGGAAAACGTGAGACTTTTCTAAATGGACGATCTGATGAAGTTGCGCACATATCCGGTGGTTATAATTTCAAAACCTTAAGTGGATGTGAAGCAGCTGATGAACGAAACAGCTGGGATAATTTTAAGCATCTAATTGCTGATGAAGAATTTTTATTTGATGCTTCAATTAAAAAGTTGGCCTCTAGTGAATCTTATGAGCAAGTCACCTTGATGGTCTGTGTGGAGGACACTGGAATTGGAATTCCTTTCTCAGCCCAAGATAGGATTTTCATGCCTTTTGTGCAGGCAGACAGCTCAACCTCTCGAAACTATGGCGGTACTGGCATCGGTTTGAGTATCAGTAAGTGCCTGGTTGAACTAATGGGTGGTCAGATAAACTTTGTAAGCCGACCCCAGATTGGGAGCACATTTTCGTTTACTGCAGATATTGGAACGTGTAAAAAGAATTCAATAACTGACGTGAAGAAACTTAATTTGGAAGATCTACCTTCTAGTTTTAGAGGGCTTAAAGCCATCGTGGTTGATGGGAAACCAGTCAGAGCTGCTGTGACTATATACCATTTGAAAAGACTGGGGATACAAGCTAAAGTTGCAAATAGCATCACTAAGGCCGTTTCTTTATGTGGAAAAAATGGTTCTTTGACCTCAGGATTATTCCAGCCTGATATTATATTTGTTGAGAAGGATTCTTGGGTTTCTGGAGAGGATGGGATCTTCAATGTATGGCAGCTGGACTGGAAACAGAATGGGCATGTGTTTAAGATGCCTCAAATGATCCTTCTTGCAACCAATATTAGTAATACTGAATTTGATAAAGCTAAAGCCGCAGGGTTCAGTGATACAGTGATCATGAAGCCATTGAGAGCTAGCATGGTGGCTGCTTTTCTTCAACAAGTTCTGGGGTCCGGGAAGAAGAGGCAGCTCGGGAAAGACATGCCTAATGGTTCCATTCGAAGCCTTCTTTGTGGAAAGAAAATCTTAGTGGTTGATGACAATGGGGTGAACCGTAGGGTTGCTGCAGGAGCATTAAAAAATTTTGGAGCTGATGTGAAGTGTGCGGAAAGTGGCAAAGTTGCTCTTGAAATGCTTCAATTGCCTCACGATTTTGATGCTTGCTTCATGGATATTCAAATGCCAGAAATGGACGGGTTTGAAGCTACTCGTCGAATTAGGACGATGGAGAGCAAGGCAAATGAGGAGTTGAAAAGTGAATGTGGTGAAGGAAATGCAGGGAATAGTGAGTTCCATATACCTATATTGGCCATGACAGCTGATGTAATCCATGCTACATATGAAGAGTGCTTGAAATGTGGGATGGATGGATATGTCTCAAAGCCTTTTGAGGAAGAGAATCTCTATCAAGCAGTTGCAAAGTTTTTCAATCCCAAGTCTACCTCAGACTCGATGACAATGCTATAA 3018 0.4175 MGLSLKMQSHHRLALRVHEQTGSNRKYTFIQAHRAWLPKFLLLWILLMALIGWCIYSKMDADTKVRRKEVLGSLCDQRARMLQDQFSVSVNHVHALAILVSTFHYYRNPSAIDQETFAEYTARTAFERPLMSGVAYAQRVVNSEREKFEKQHGWVIKTMEREPSQIRDEYAPVIFAQETVSYLESIDMMSGEEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPSEPTTEQLIKATAGFVGGSFDVESLVENLLGQLAGNQAILVNVYDITNSTDPLIMYGNHSEEGDTSLVHKSKLDFGDPYRKHQMICRYHQKAPTNWIAITTAFLFFVILLLVGYILYGAGNHIVKVEDDFHEMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLHTELNSTQRDYAQTAQQCGKALIALINEVLDRAKIEAGKLELEAVPFDLRSILDDVLSLFSEKSRHKGLELAVFVSDKVPDIVMGDPGRFRQIVTNLVGNSVKFTERGHIFVKVHLSENRKSTMNGKRETFLNGRSDEVAHISGGYNFKTLSGCEAADERNSWDNFKHLIADEEFLFDASIKKLASSESYEQVTLMVCVEDTGIGIPFSAQDRIFMPFVQADSSTSRNYGGTGIGLSISKCLVELMGGQINFVSRPQIGSTFSFTADIGTCKKNSITDVKKLNLEDLPSSFRGLKAIVVDGKPVRAAVTIYHLKRLGIQAKVANSITKAVSLCGKNGSLTSGLFQPDIIFVEKDSWVSGEDGIFNVWQLDWKQNGHVFKMPQMILLATNISNTEFDKAKAAGFSDTVIMKPLRASMVAAFLQQVLGSGKKRQLGKDMPNGSIRSLLCGKKILVVDDNGVNRRVAAGALKNFGADVKCAESGKVALEMLQLPHDFDACFMDIQMPEMDGFEATRRIRTMESKANEELKSECGEGNAGNSEFHIPILAMTADVIHATYEECLKCGMDGYVSKPFEEENLYQAVAKFFNPKSTSDSMTML* 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00111 1005 ProSiteProfiles Histidine kinase domain profile. 388 678 IPR005467 -
Rops2g00111 1005 ProSiteProfiles CHASE domain profile. 108 320 IPR006189 -
Rops2g00111 1005 SMART CHASE_2 108 293 IPR006189 -
Rops2g00111 1005 CDD REC_hyHK_CKI1_RcsC-like 859 989 - -
Rops2g00111 1005 Coils Coil 431 451 - -
Rops2g00111 1005 SMART HKATPase_4 493 678 IPR003594 -
Rops2g00111 1005 SMART HisKA_10 381 446 IPR003661 GO:0000155|GO:0007165
Rops2g00111 1005 PRINTS Bacterial sensor protein C-terminal signature 662 675 IPR004358 GO:0016310|GO:0016772
Rops2g00111 1005 PRINTS Bacterial sensor protein C-terminal signature 621 631 IPR004358 GO:0016310|GO:0016772
Rops2g00111 1005 PRINTS Bacterial sensor protein C-terminal signature 638 656 IPR004358 GO:0016310|GO:0016772
Rops2g00111 1005 PRINTS Bacterial sensor protein C-terminal signature 603 617 IPR004358 GO:0016310|GO:0016772
Rops2g00111 1005 ProSiteProfiles Response regulatory domain profile. 703 833 IPR001789 GO:0000160
Rops2g00111 1005 PANTHER TWO-COMPONENT HISTIDINE KINASE 23 990 - -
Rops2g00111 1005 CDD HATPase_EvgS-ArcB-TorS-like 498 674 - -
Rops2g00111 1005 FunFam Histidine kinase 4 353 444 - -
Rops2g00111 1005 Gene3D - 355 444 - -
Rops2g00111 1005 Pfam Response regulator receiver domain 859 989 IPR001789 GO:0000160
Rops2g00111 1005 SUPERFAMILY CheY-like 856 994 IPR011006 -
Rops2g00111 1005 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 435 673 IPR036890 -
Rops2g00111 1005 Pfam His Kinase A (phospho-acceptor) domain 381 446 IPR003661 GO:0000155|GO:0007165
Rops2g00111 1005 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 367 447 IPR036097 GO:0000155|GO:0007165
Rops2g00111 1005 CDD HisKA 381 442 IPR003661 GO:0000155|GO:0007165
Rops2g00111 1005 ProSiteProfiles Response regulatory domain profile. 858 993 IPR001789 GO:0000160
Rops2g00111 1005 SUPERFAMILY CheY-like 699 834 IPR011006 -
Rops2g00111 1005 SMART REC_2 857 989 IPR001789 GO:0000160
Rops2g00111 1005 Pfam CHASE domain 111 291 IPR006189 -
Rops2g00111 1005 Gene3D CHASE domain 112 327 IPR042240 -
Rops2g00111 1005 Gene3D - 697 837 - -
Rops2g00111 1005 Gene3D - 852 1001 - -
Rops2g00111 1005 FunFam Histidine kinase 3 852 997 - -
Rops2g00111 1005 Gene3D - 445 682 IPR036890 -
Rops2g00111 1005 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 493 675 IPR003594 -
Rops2g00111 1005 Gene3D - 59 111 - -
Rops2g00111 1005 FunFam Histidine kinase 4 112 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00111 Rops-Chr2 1721440 1730058 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00111 22 1001 Histidine Kinase Gene Family AT2G01830 70.766 0.0 1397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Rops2g00111 HATPase_c 2.6e-31 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00111 K14489 - gmx:100818481 1739.93