LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops2g00111	ATGGGTCTTAGCTTGAAGATGCAGAGCCACCACCGTTTGGCTTTGAGGGTACACGAGCAAACTGGGAGCAATAGAAAATACACTTTCATTCAGGCCCACAGAGCTTGGCTTCCGAAGTTTTTGCTGCTGTGGATCTTGTTGATGGCTCTAATTGGTTGGTGCATCTACAGTAAAATGGATGCTGACACTAAAGTTAGAAGGAAAGAGGTGTTGGGTAGCCTCTGTGATCAAAGGGCAAGAATGCTGCAAGACCAATTCAGTGTTAGTGTCAACCATGTCCATGCCCTTGCCATCCTTGTCTCAACCTTTCATTACTACAGAAACCCTTCTGCCATAGACCAGGAAACCTTTGCAGAATATACGGCTAGGACAGCATTTGAAAGGCCATTAATGAGTGGGGTGGCCTATGCACAAAGAGTGGTTAACTCGGAGAGAGAAAAATTTGAGAAGCAACATGGATGGGTTATAAAGACAATGGAAAGAGAGCCTTCACAGATTAGGGATGAGTATGCACCGGTGATATTTGCACAAGAAACTGTCTCTTACCTTGAATCCATTGATATGATGTCCGGGGAGGAGGACCGAGAGAACATTTTGAGGGCTAGAGCCACTGGGAAAGCTGTTCTGACTAGTCCTTTCAGGCTGTTGGGTTCTCATCATCTTGGTGTGGTTTTAACATTTCCTGTTTACAAATCTAAGCTCCCTTCAGAGCCAACAACTGAACAGCTCATTAAAGCAACAGCAGGATTTGTTGGAGGATCCTTTGATGTTGAGTCCCTTGTGGAGAATTTACTTGGTCAGCTTGCTGGTAACCAAGCAATTTTGGTGAATGTATATGATATCACAAACTCCACTGATCCCCTAATCATGTATGGCAACCATTCTGAAGAAGGCGATACATCTCTTGTCCATAAAAGTAAGCTTGATTTTGGAGATCCATACAGGAAACATCAAATGATATGTAGGTATCACCAGAAGGCACCAACAAATTGGATAGCAATTACCACGGCATTCCTATTCTTTGTGATTCTTTTATTAGTGGGTTACATTTTATACGGTGCTGGAAATCATATAGTCAAAGTAGAGGATGATTTCCATGAAATGCAGGAATTAAAAGTTAGAGCAGAAGCAGCTGATGTTGCCAAGTCACAGTTTCTAGCTACTGTCTCTCATGAAATTAGAACACCCATGAATGGCATTTTAGGAATGCTTGCTCTGCTTTTACACACAGAATTGAATTCAACCCAACGAGATTATGCTCAGACTGCTCAACAATGTGGGAAGGCACTGATAGCATTAATAAATGAGGTCCTTGATCGAGCCAAAATTGAAGCTGGCAAATTAGAGCTGGAAGCAGTTCCATTTGACCTTCGATCCATACTTGATGATGTTCTTTCTCTCTTCTCTGAAAAGTCTAGACACAAAGGTTTAGAGCTGGCAGTGTTTGTTTCTGATAAAGTTCCAGATATTGTTATGGGAGATCCTGGAAGATTCAGACAAATAGTAACTAATCTTGTTGGCAACTCTGTTAAATTCACCGAGCGAGGACATATATTTGTTAAAGTCCACCTATCTGAGAATAGAAAATCCACAATGAATGGAAAACGTGAGACTTTTCTAAATGGACGATCTGATGAAGTTGCGCACATATCCGGTGGTTATAATTTCAAAACCTTAAGTGGATGTGAAGCAGCTGATGAACGAAACAGCTGGGATAATTTTAAGCATCTAATTGCTGATGAAGAATTTTTATTTGATGCTTCAATTAAAAAGTTGGCCTCTAGTGAATCTTATGAGCAAGTCACCTTGATGGTCTGTGTGGAGGACACTGGAATTGGAATTCCTTTCTCAGCCCAAGATAGGATTTTCATGCCTTTTGTGCAGGCAGACAGCTCAACCTCTCGAAACTATGGCGGTACTGGCATCGGTTTGAGTATCAGTAAGTGCCTGGTTGAACTAATGGGTGGTCAGATAAACTTTGTAAGCCGACCCCAGATTGGGAGCACATTTTCGTTTACTGCAGATATTGGAACGTGTAAAAAGAATTCAATAACTGACGTGAAGAAACTTAATTTGGAAGATCTACCTTCTAGTTTTAGAGGGCTTAAAGCCATCGTGGTTGATGGGAAACCAGTCAGAGCTGCTGTGACTATATACCATTTGAAAAGACTGGGGATACAAGCTAAAGTTGCAAATAGCATCACTAAGGCCGTTTCTTTATGTGGAAAAAATGGTTCTTTGACCTCAGGATTATTCCAGCCTGATATTATATTTGTTGAGAAGGATTCTTGGGTTTCTGGAGAGGATGGGATCTTCAATGTATGGCAGCTGGACTGGAAACAGAATGGGCATGTGTTTAAGATGCCTCAAATGATCCTTCTTGCAACCAATATTAGTAATACTGAATTTGATAAAGCTAAAGCCGCAGGGTTCAGTGATACAGTGATCATGAAGCCATTGAGAGCTAGCATGGTGGCTGCTTTTCTTCAACAAGTTCTGGGGTCCGGGAAGAAGAGGCAGCTCGGGAAAGACATGCCTAATGGTTCCATTCGAAGCCTTCTTTGTGGAAAGAAAATCTTAGTGGTTGATGACAATGGGGTGAACCGTAGGGTTGCTGCAGGAGCATTAAAAAATTTTGGAGCTGATGTGAAGTGTGCGGAAAGTGGCAAAGTTGCTCTTGAAATGCTTCAATTGCCTCACGATTTTGATGCTTGCTTCATGGATATTCAAATGCCAGAAATGGACGGGTTTGAAGCTACTCGTCGAATTAGGACGATGGAGAGCAAGGCAAATGAGGAGTTGAAAAGTGAATGTGGTGAAGGAAATGCAGGGAATAGTGAGTTCCATATACCTATATTGGCCATGACAGCTGATGTAATCCATGCTACATATGAAGAGTGCTTGAAATGTGGGATGGATGGATATGTCTCAAAGCCTTTTGAGGAAGAGAATCTCTATCAAGCAGTTGCAAAGTTTTTCAATCCCAAGTCTACCTCAGACTCGATGACAATGCTATAA	3018	0.4175	MGLSLKMQSHHRLALRVHEQTGSNRKYTFIQAHRAWLPKFLLLWILLMALIGWCIYSKMDADTKVRRKEVLGSLCDQRARMLQDQFSVSVNHVHALAILVSTFHYYRNPSAIDQETFAEYTARTAFERPLMSGVAYAQRVVNSEREKFEKQHGWVIKTMEREPSQIRDEYAPVIFAQETVSYLESIDMMSGEEDRENILRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPSEPTTEQLIKATAGFVGGSFDVESLVENLLGQLAGNQAILVNVYDITNSTDPLIMYGNHSEEGDTSLVHKSKLDFGDPYRKHQMICRYHQKAPTNWIAITTAFLFFVILLLVGYILYGAGNHIVKVEDDFHEMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLALLLHTELNSTQRDYAQTAQQCGKALIALINEVLDRAKIEAGKLELEAVPFDLRSILDDVLSLFSEKSRHKGLELAVFVSDKVPDIVMGDPGRFRQIVTNLVGNSVKFTERGHIFVKVHLSENRKSTMNGKRETFLNGRSDEVAHISGGYNFKTLSGCEAADERNSWDNFKHLIADEEFLFDASIKKLASSESYEQVTLMVCVEDTGIGIPFSAQDRIFMPFVQADSSTSRNYGGTGIGLSISKCLVELMGGQINFVSRPQIGSTFSFTADIGTCKKNSITDVKKLNLEDLPSSFRGLKAIVVDGKPVRAAVTIYHLKRLGIQAKVANSITKAVSLCGKNGSLTSGLFQPDIIFVEKDSWVSGEDGIFNVWQLDWKQNGHVFKMPQMILLATNISNTEFDKAKAAGFSDTVIMKPLRASMVAAFLQQVLGSGKKRQLGKDMPNGSIRSLLCGKKILVVDDNGVNRRVAAGALKNFGADVKCAESGKVALEMLQLPHDFDACFMDIQMPEMDGFEATRRIRTMESKANEELKSECGEGNAGNSEFHIPILAMTADVIHATYEECLKCGMDGYVSKPFEEENLYQAVAKFFNPKSTSDSMTML*	1006

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops2g00111	1005	ProSiteProfiles	Histidine kinase domain profile.	388	678	IPR005467	-
	Rops2g00111	1005	ProSiteProfiles	CHASE domain profile.	108	320	IPR006189	-
	Rops2g00111	1005	SMART	CHASE_2	108	293	IPR006189	-
	Rops2g00111	1005	CDD	REC_hyHK_CKI1_RcsC-like	859	989	-	-
	Rops2g00111	1005	Coils	Coil	431	451	-	-
	Rops2g00111	1005	SMART	HKATPase_4	493	678	IPR003594	-
	Rops2g00111	1005	SMART	HisKA_10	381	446	IPR003661	GO:0000155\|GO:0007165
	Rops2g00111	1005	PRINTS	Bacterial sensor protein C-terminal signature	662	675	IPR004358	GO:0016310\|GO:0016772
	Rops2g00111	1005	PRINTS	Bacterial sensor protein C-terminal signature	621	631	IPR004358	GO:0016310\|GO:0016772
	Rops2g00111	1005	PRINTS	Bacterial sensor protein C-terminal signature	638	656	IPR004358	GO:0016310\|GO:0016772

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops2g00111	Rops-Chr2	1721440	1730058	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops2g00111	22	1001	Histidine Kinase Gene Family	AT2G01830	70.766	0.0	1397

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	Others	Rops2g00111		HATPase_c	2.6e-31	CL0025

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops2g00111	K14489		-	gmx:100818481	1739.93

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