Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00108 ATGGGGAAGAAGAAGAAGAGGGTTTCTTCTAAAGTGTGGTGTTATTACTGCGATCGCGAATTTGACGACGAGAAGATCTTGGTTCAGCATCAGAAAGCCAAGCACTTCAAGTGCCATGTCTGTCATAAAAAGCTCTCCACCGCCGGCGGCATGGCCATCCACGTCCTCCAGGTTCACAAGGAATCCGTCATCAAGGTGCCCAATGCAAAACCTGGCAGAGAGAGTACAGATATTGAAATATATGGAATGCAAGGGATTCCAGCAGATGTCTTGGCTGCTCATTATGGAGAAGAAGAAGATGACGTTCCATCAAAGGCAGCCAAGGTGGATATTTCCTCAACTCAGCTTGTAGGTGGAATAGTGCCACCTCCTTTGGGTGCAGGTTATCCTCCTCGATCAACCCTGGGCACAGTTCCACCAATTTACAATCCCACTGTACCTGGGCACCCAAATGCTTGGGTGGCTCCACCTCGACCACAGCCTTGGTTTACACAACCTCCAGCTGTTTCAATTCCTCCTCCTGCCCCATACATCCAGCAGCCATTATTTCCTGTGCAGAATGTGAGACCACCTCTGCCATCAACTGCTTCTCCTGCACTCCAAACTCAGATTACTCCTCCTGGATTGCCTACATCTACGCCTTCTGTCCCAGTTTCACAGCCTTTATTTCCTGTCGTCGGAAATAATCATACAACCACTGCACCTCTGCCTTCAAGTGTTCCATCAATAACCCCAGCACCGTCTTCAAATGTCCCTGTTGATGCCCATTTAGGTGTCAACTCTTCTGTGACAAATAGTTATCAGGCAATAGGGGTTCCAGGTGGGACTGCAGGTAACTCACATTCTTATGCTTCTGGTCCAAATACTGGTGGTCCTTCGATTGGACCTCCCCCAGTAATTGCAAACAAAGCTCCTGCTCCTCAGCCTGCCACTAATGAAGTCTACTTAGTATGGGATGATGAGGCAATGTCCATGGAGGAAAGAAGGATGTCTTTACCAAAATATCAGGTGCATGATGAAAGTAGCCAGATGAGCTCCATTGATGCCGCCATTGATAAAAGGATACTTGAAAGCAGGCTGGCTGGTCGTATGGCATTTTAG 1101 0.4805 MGKKKKRVSSKVWCYYCDREFDDEKILVQHQKAKHFKCHVCHKKLSTAGGMAIHVLQVHKESVIKVPNAKPGRESTDIEIYGMQGIPADVLAAHYGEEEDDVPSKAAKVDISSTQLVGGIVPPPLGAGYPPRSTLGTVPPIYNPTVPGHPNAWVAPPRPQPWFTQPPAVSIPPPAPYIQQPLFPVQNVRPPLPSTASPALQTQITPPGLPTSTPSVPVSQPLFPVVGNNHTTTAPLPSSVPSITPAPSSNVPVDAHLGVNSSVTNSYQAIGVPGGTAGNSHSYASGPNTGGPSIGPPPVIANKAPAPQPATNEVYLVWDDEAMSMEERRMSLPKYQVHDESSQMSSIDAAIDKRILESRLAGRMAF* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00108 366 ProSitePatterns Zinc finger C2H2 type domain signature. 38 59 IPR013087 -
Rops2g00108 366 ProSitePatterns Zinc finger C2H2 type domain signature. 14 35 IPR013087 -
Rops2g00108 366 PANTHER ZINC FINGER PROTEIN 207 1 366 - -
Rops2g00108 366 SMART c2h2final6 12 35 IPR013087 -
Rops2g00108 366 SMART c2h2final6 36 59 IPR013087 -
Rops2g00108 366 CDD SUF4-like 13 92 - -
Rops2g00108 366 ProSiteProfiles Zinc finger BED-type profile. 7 66 IPR003656 GO:0003677
Rops2g00108 366 MobiDBLite consensus disorder prediction 278 301 - -
Rops2g00108 366 Gene3D Classic Zinc Finger 1 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00108 Rops-Chr2 1686389 1690035 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00108 1 366 C2H2 Transcription Factor Family AT1G30970 61.579 2.14e-141 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops2g00108 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00108 - - gmx:100789368 640.573