Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00107 ATGCCTTTTGTCACCACAGAGACAACAACAGAAACAGTAGCAGAACACATGAAATGGAGAAGACCCAGAAACCAATTCAACCACCACCACCACCCCATTTCACAAACAGATCCAAACCCACAAATCTCTCCCATTATCCAATCCACTAGGTGCAAGTCCACCATTTCCTCTTTGCTCCTCTCCACTTTCTCCAATGAAACTAACACACATGCCATCATCAACAACAGTGTCCAGAGCAAGAAAAAAAGCAACTTTTCTGCATCAACCTTCAGAGGGTTCGGGTGCACCGCCGGTGCATCACAGCAGGTGTCGGTGCCGGAGGTGATTCGTGCCTCCGCTGATTGGCAAGGGAAGAAAACCAGAAAAAAGAAGCACAAGAACAGAAACAGTAACAGCAACAAGAACAGTAACAGTAACAAAACTTGCCATGGTGGGATTCTAGATGGTTCTGCTACTTGTGCTGTGGATTTTCAAGATGTTTGGTGTGGCCCTGGAATTGGGTATTCAACAGATGCTTCTGCATCTGTTGATTGTGTTGTGTCAAGGAAGAATGTGTCTACAAGAGGGAAAATTGATGTGGAGAAGATAGCTCACAGGGAGCGTTCATTTTCTTTTGGAAGGCGCACAGTGTCATTTGTGGATACTGATCCTGACATTTTCCCAGACTCAGACTCTTTTGGAACTGCAACATACTATCACCACCATATTAGAGATCCTTCCTCTGATGGCTTTCCTGAGATAATGATGCTTCAAGGAAGTATCATAATGGGGGGACGATTAAATTCACATGACCATTTCAGAGACTGGAGACTTGATGTTGATAATATGTCGTATGAGCAATTGCTTGAGCTCAGTGAGAGAATTGGTTATGTGAACACTGGACTTAAAGAAGATGAGATGGGACGTCACATAAGGAAGACTAAACTTCAATTTTCAGATGATATATCAAAGCATCAAGTAGACAAAAAGTGCAGCATTTGTCAGGATGAGTATGAAGCAGGTGATGAGCTGGGGAAGCTGAAGTGTGATCACACCTATCACTTCCAGTGTATAAGGCAATGGGTTGCACACAAAAATTTCTGCCCAGTGTGCAAGCAACAAGTTGCCTCTCGACACTGA 1119 0.4379 MPFVTTETTTETVAEHMKWRRPRNQFNHHHHPISQTDPNPQISPIIQSTRCKSTISSLLLSTFSNETNTHAIINNSVQSKKKSNFSASTFRGFGCTAGASQQVSVPEVIRASADWQGKKTRKKKHKNRNSNSNKNSNSNKTCHGGILDGSATCAVDFQDVWCGPGIGYSTDASASVDCVVSRKNVSTRGKIDVEKIAHRERSFSFGRRTVSFVDTDPDIFPDSDSFGTATYYHHHIRDPSSDGFPEIMMLQGSIIMGGRLNSHDHFRDWRLDVDNMSYEQLLELSERIGYVNTGLKEDEMGRHIRKTKLQFSDDISKHQVDKKCSICQDEYEAGDELGKLKCDHTYHFQCIRQWVAHKNFCPVCKQQVASRH* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00107 372 FunFam E3 ubiquitin-protein ligase rnf12-A 291 370 - -
Rops2g00107 372 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 44 369 IPR045191 GO:0061630
Rops2g00107 372 SUPERFAMILY RING/U-box 323 369 - -
Rops2g00107 372 MobiDBLite consensus disorder prediction 114 141 - -
Rops2g00107 372 Pfam Ring finger domain 323 365 IPR001841 -
Rops2g00107 372 SMART ring_2 324 364 IPR001841 -
Rops2g00107 372 ProSiteProfiles Zinc finger RING-type profile. 324 365 IPR001841 -
Rops2g00107 372 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 291 370 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00107 Rops-Chr2 1673949 1679833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00107 13 279 C3H Transcription Factor Family AT1G73760 43.056 1.76e-48 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00107 - - vum:124831997 543.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops5g00290 5 4484747 4489027 Rops2g00107 2 1673949 1679833 ECH
Rops2g00107 2 1673949 1679833 Rops2g00107 2 1673949 1679833 ECH