Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00084 ATGGATATTGAGGAGGACATTCGTTCCTTACAGCTCGAGTCAGCAGAAGACAATAATGGGGTGGTAAATCCGGAGGATGGAAAGCCAGAAGTTGAGAAATCTGATAAGATGGATGAAGATCCAAAGCAGGAGGTTCAGGCAAAGGCTGTTCAGGATGATCCGAAAGTGAAAGATAAGGAAATTCCTTCTCAAGATGAAGATGAGCCAGAGATGACGAAAAGACACTTGAATGTTGTGTTTATTGGCCATGTTGATGCTGGTAAGTCTACAACTGGAGGGCAGATACTTTACCTCAGTGGTCAGGTTGATGAACGGACTATCCAAAAATATGAGAAAGAAGCTAAGGACAAAAGTCGAGAAAGCTGGTATATGGCTTATATAATGGACACAAATGAGGAGGAGAGGGTGAAGGGAAAGACAGTTGAAGTTGGAAGAGCACATTTTGAGACAGAGACAACAAGGTTCACCATTTTGGATGCGCCTGGTCACAAAAGCTATGTTCCTAATATGATCAGTGGTGCATCTCAAGCTGATATTGGAGTGTTGGTAATTTCTGCTCGGAAGGGAGAGTTTGAAACTGGATATGAGAGAGGTGGACAAACTCGTGAACATGTCCAGCTTGCAAAAACGCTGGGTGTGACTAAGCTGCTTGTTGTTGTCAATAAAATGGATGAACCTACGGTAAACTGGTCAAAAGAAAGGTATGACGAAATTGAGACAAAGATGACTCCATTTCTAAAGCAATCAGGATACAATGTAAAGAAAGATGTCTTGTTTTTACCAATATCGGGGCTGATGGGCTCAAACATAAAAACAAGAATGGATAAAAGCAATTGTTCATGGTGGGATGGGCCTTGCTTATTTGAAGCCCTTGATGCTATTGAAGTTCCTATGGGAGATCCCAAAGGTCCTTTCAGGATGCCTATAATTGACAAATTCAAAGACTTGGGAACTGTTGTTATGGGCAAAGTGGAATCTGGTACTATTCGTGAGGGAGATTCCTTGTTGGTCATGCCGAATAAGGATCAAGTAAAAGTTGTTGCTATATTTATTGATGAAGATCGTGTTAAGCGTGCTGGACCTGGTGAAAATTTAAGGGTTAGATTATCTGGTGTTGAAGAAGAGGACATATTATCTGGGTTTGTCCTGTCTAGCGTTGTGAATCCAATACCAGCAGTTACGGAGTTTGTTGCTCAGTTGGTGATCCTTGAATTGCTGGACAATGCTATTTTTACTGCCGGGTACAAGGCTATTCTGCACATCCACTCTGTAGTTGAGGAATGTGAGATTGTCGAGCTCTTGCAGCAATTTGATCCCAAGACAAAGAAGCCTATGAAAAAGAAAGTTCTCTTTGTGAAGAATGGTGCTGTTGTAGTATGCCGTGTTCAGGTTAATAACTCAATATGCATTGAGAAGTTCTCTGATTTTCCACAACTAGGGAGGTTCACTCTTCGCACTGAAGGAAAAACTGTTGCTGTGGGAAAAGTCACTGGTCTGTGA 1500 0.418 MDIEEDIRSLQLESAEDNNGVVNPEDGKPEVEKSDKMDEDPKQEVQAKAVQDDPKVKDKEIPSQDEDEPEMTKRHLNVVFIGHVDAGKSTTGGQILYLSGQVDERTIQKYEKEAKDKSRESWYMAYIMDTNEEERVKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVQLAKTLGVTKLLVVVNKMDEPTVNWSKERYDEIETKMTPFLKQSGYNVKKDVLFLPISGLMGSNIKTRMDKSNCSWWDGPCLFEALDAIEVPMGDPKGPFRMPIIDKFKDLGTVVMGKVESGTIREGDSLLVMPNKDQVKVVAIFIDEDRVKRAGPGENLRVRLSGVEEEDILSGFVLSSVVNPIPAVTEFVAQLVILELLDNAIFTAGYKAILHIHSVVEECEIVELLQQFDPKTKKPMKKKVLFVKNGAVVVCRVQVNNSICIEKFSDFPQLGRFTLRTEGKTVAVGKVTGL* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00084 499 Pfam Elongation factor Tu GTP binding domain 73 274 IPR000795 GO:0003924|GO:0005525
Rops2g00084 499 Pfam Elongation factor Tu C-terminal domain 390 498 IPR004160 -
Rops2g00084 499 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 73 302 IPR000795 GO:0003924|GO:0005525
Rops2g00084 499 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 129 144 IPR031157 -
Rops2g00084 499 MobiDBLite consensus disorder prediction 26 70 - -
Rops2g00084 499 CDD eRF3_II 304 385 - -
Rops2g00084 499 CDD EF1_alpha 77 297 - -
Rops2g00084 499 Gene3D - 54 297 IPR027417 -
Rops2g00084 499 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 53 297 - -
Rops2g00084 499 Gene3D Translation factors 392 499 - -
Rops2g00084 499 Gene3D Translation factors 302 386 - -
Rops2g00084 499 FunFam Eukaryotic peptide chain release factor GTP-binding subunit ERF3A 301 387 - -
Rops2g00084 499 SUPERFAMILY Translation proteins 297 389 IPR009000 -
Rops2g00084 499 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 56 308 IPR027417 -
Rops2g00084 499 MobiDBLite consensus disorder prediction 1 70 - -
Rops2g00084 499 FunFam Putative translation elongation/initiation factor family protein 391 499 - -
Rops2g00084 499 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 393 498 IPR009001 -
Rops2g00084 499 PANTHER TRANSLATION FACTOR 65 497 - -
Rops2g00084 499 CDD eRF3_C_III 391 499 - -
Rops2g00084 499 PRINTS GTP-binding elongation factor signature 172 183 IPR000795 GO:0003924|GO:0005525
Rops2g00084 499 PRINTS GTP-binding elongation factor signature 216 225 IPR000795 GO:0003924|GO:0005525
Rops2g00084 499 PRINTS GTP-binding elongation factor signature 156 166 IPR000795 GO:0003924|GO:0005525
Rops2g00084 499 PRINTS GTP-binding elongation factor signature 77 90 IPR000795 GO:0003924|GO:0005525
Rops2g00084 499 Pfam Elongation factor Tu domain 2 317 383 IPR004161 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00084 Rops-Chr2 1385403 1401597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00084 73 494 Eukaryotic Initiation Factors Gene Family AT5G60390 37.882 9.28e-97 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00084 K03267 - gmx:100793653 905.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00084 2 1385403 1401597 Rops2g00084 2 1385403 1401597 ECH