Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00077 ATGAGCCATGAGCTGGTGGAAACGTACTCCTGTATGCCATCGACGGAGCGTGGCCGTGGGATTCTCATCTCCGGCGACCCTAAGTCCAACTCCATGCTTTACACCAACGGCAGATCCGTCATCATCATGAACCTCCAAAACCCACTTCAAGTCTCCGTCTATGGAGACCACGCTTACCCCGCCACCGTGGCCAGATTCTCCCCTAACGGAGAGTGGGTGGCCTCTGCTGACGTGTCAGGCACCGTCAGGATCTGGGGTACCCGAAACGACTTCGTTTTGAAGAAGGAGTTCCGCGTCCTCTCCGGTCGGATCGACGACCTTCACTGGTCCCCCGATGGCCTCAGGATCGTTGCTTGTGGCGATGCCAAGGGCCACTCCTTCGTTCGCGCTTTCATGTGGGATTCTGGGACTAATGTTGGTGAATTTGATGGTCATTCAAGGCGAGTTTTGAGTTGTTCATATAAACCAACAAGACCTTTTCGCATTGTCACGTGTGGAGAGGATTTTCTGGTCAACTTTTATGAAGGACCGCCATTTAGATTCAAGCAATCTAAAAGGGATCATTCAAATTTTGTCAATTGTGTAAGATATTCTCCAGATGGCAGTAAATTTTTGAGTGTAGGTTCTGACAAAAAAGGTATCATATTTGATGGAAAGAGTGGAGAGAAGATCGGTCAGTTGTCTTCTGAAGGTGGCCATACTGGCAGTATTTATGCTGTTAGCTGGAGTCCTGATGGAAAACAAGTGCTGACTGTATCTGCTGACAAGTCTGCAAAAGTATGGGACGTATCTGAGGAAAACAGTGGAAAGGTGAAGAAAACATTGACATGTCCTGGCTTTGGTGGAGTTGAAGACATGCTAGTGGGGTGCCTATGGTTGAACGATTATCTTGTCACTGTTTCTCTTGGTGGGACAATATCTATATTTTCAGCAAGTGATCTTGATAAAGCCCCAACATCATTTGCTGGACATATGAAAAATGTTTCCTCCTTAGCTATGCTTAGAAGTAACCCTAGAGTGCTCTTGTCTAGCAGTTATGATGGCTTAATAGTTAAGTGGATTCAAGGGATTGGATATAGTGGTAAATTACAAAGGAAGGAGAATTCTCAAATCAAATGCTTAGCAGCTGTAGAAGAAGAGATTGTTACAGCTGGATTCGATAATAAGATATGGCGAGTTTCTTTACATGGGGATCAGTGTGGAGATGCTGAAGCCATTGATATAGGAAATCAACCAAAGGATTTTAGTGTTGCACTTCAATCTCCTGAACTTGCTCTGGTTTCAATTGATTCAGGAGTTGTCATGCTGCGTGGTACAAAAATTGTGTCAACCATTAATCTTGGGTTTACTGTTTCAGCTTCTGTTGTCTCTCCTGATGGAAGTGAAGCCATTATTGGTGGACAGGATGGTAAATTGCACATATATTCTATTTCTGGTGATACACTTGTAGAAGAGGCTGTGCTTGAGAAACATCGGGGTGCTGTTAGTGTCATACGGTATTCTCCTGACTTTTCAATGTTCGCATCAGGGGATGTCAACCGAGAAGCTGTAGTGTGGGACCGTGCCTCCCGAGATGTGAAGCTTAAGAACATGTTGTATCATACTGCACGGATAAACTGCCTTGCTTGGTCCCCTGATAGCCATAGGATTGCTACAGGATCACTTGACACATGTGTCATCATATATGAAATTGACCAGCCTGCATCTAATAGAATTACCATAAAGGGTGCTCACTTAGGTGGGGTTTATGGGTTAGTATTCACTGATGAATATAGTTTGGTTAGCTCAGGTGAGGATGCTTTTATCCGTGTCTGGAAGATAACCCCTCCATGA 1833 0.4474 MSHELVETYSCMPSTERGRGILISGDPKSNSMLYTNGRSVIIMNLQNPLQVSVYGDHAYPATVARFSPNGEWVASADVSGTVRIWGTRNDFVLKKEFRVLSGRIDDLHWSPDGLRIVACGDAKGHSFVRAFMWDSGTNVGEFDGHSRRVLSCSYKPTRPFRIVTCGEDFLVNFYEGPPFRFKQSKRDHSNFVNCVRYSPDGSKFLSVGSDKKGIIFDGKSGEKIGQLSSEGGHTGSIYAVSWSPDGKQVLTVSADKSAKVWDVSEENSGKVKKTLTCPGFGGVEDMLVGCLWLNDYLVTVSLGGTISIFSASDLDKAPTSFAGHMKNVSSLAMLRSNPRVLLSSSYDGLIVKWIQGIGYSGKLQRKENSQIKCLAAVEEEIVTAGFDNKIWRVSLHGDQCGDAEAIDIGNQPKDFSVALQSPELALVSIDSGVVMLRGTKIVSTINLGFTVSASVVSPDGSEAIIGGQDGKLHIYSISGDTLVEEAVLEKHRGAVSVIRYSPDFSMFASGDVNREAVVWDRASRDVKLKNMLYHTARINCLAWSPDSHRIATGSLDTCVIIYEIDQPASNRITIKGAHLGGVYGLVFTDEYSLVSSGEDAFIRVWKITPP* 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00077 610 SUPERFAMILY WD40 repeat-like 26 353 IPR036322 GO:0005515
Rops2g00077 610 Gene3D - 9 607 IPR015943 GO:0005515
Rops2g00077 610 ProSiteProfiles Trp-Asp (WD) repeats profile. 531 572 IPR001680 GO:0005515
Rops2g00077 610 Pfam WD domain, G-beta repeat 186 212 IPR001680 GO:0005515
Rops2g00077 610 Pfam WD domain, G-beta repeat 534 562 IPR001680 GO:0005515
Rops2g00077 610 Pfam WD domain, G-beta repeat 64 85 IPR001680 GO:0005515
Rops2g00077 610 Pfam WD domain, G-beta repeat 231 262 IPR001680 GO:0005515
Rops2g00077 610 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 488 520 - -
Rops2g00077 610 CDD WD40 57 350 - -
Rops2g00077 610 ProSiteProfiles Trp-Asp (WD) repeats profile. 575 610 IPR001680 GO:0005515
Rops2g00077 610 SUPERFAMILY WD40 repeat-like 295 607 IPR036322 GO:0005515
Rops2g00077 610 Gene3D - 12 338 IPR015943 GO:0005515
Rops2g00077 610 ProSitePatterns Trp-Asp (WD) repeats signature. 249 263 IPR019775 -
Rops2g00077 610 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 230 264 - -
Rops2g00077 610 PANTHER WD-REPEATCONTAINING PROTEIN WDR1 1 607 - -
Rops2g00077 610 SMART WD40_4 47 86 IPR001680 GO:0005515
Rops2g00077 610 SMART WD40_4 314 354 IPR001680 GO:0005515
Rops2g00077 610 SMART WD40_4 481 520 IPR001680 GO:0005515
Rops2g00077 610 SMART WD40_4 438 476 IPR001680 GO:0005515
Rops2g00077 610 SMART WD40_4 135 175 IPR001680 GO:0005515
Rops2g00077 610 SMART WD40_4 178 217 IPR001680 GO:0005515
Rops2g00077 610 SMART WD40_4 525 563 IPR001680 GO:0005515
Rops2g00077 610 SMART WD40_4 567 606 IPR001680 GO:0005515
Rops2g00077 610 SMART WD40_4 268 310 IPR001680 GO:0005515
Rops2g00077 610 SMART WD40_4 90 134 IPR001680 GO:0005515
Rops2g00077 610 SMART WD40_4 220 262 IPR001680 GO:0005515
Rops2g00077 610 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 575 610 - -
Rops2g00077 610 ProSiteProfiles Trp-Asp (WD) repeats profile. 230 271 IPR001680 GO:0005515
Rops2g00077 610 ProSiteProfiles Trp-Asp (WD) repeats profile. 488 520 IPR001680 GO:0005515
Rops2g00077 610 ProSiteProfiles Trp-Asp (WD) repeats profile. 54 95 IPR001680 GO:0005515
Rops2g00077 610 ProSiteProfiles Trp-Asp (WD) repeats profile. 185 226 IPR001680 GO:0005515
Rops2g00077 610 FunFam Actin-interacting protein 1 12 338 - -
Rops2g00077 610 FunFam Actin-interacting protein 1 339 607 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00077 Rops-Chr2 1307530 1313753 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00077 186 510 Eukaryotic Initiation Factors Gene Family AT2G46290 23.055 7.85e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00077 K24736 - gmx:100794702 1136.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00077 2 1307530 1313753 Rops2g00077 2 1307530 1313753 ECH