Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00070 ATGGAGCAGCCAACATGGATCCCTCATCCTCCTCCACCCACAACCACCGTCACCACGGTGCCGTTCATCGTGGAACCGATAAATCACGAACCCCCCGCCGCCAACAACTTCCCCAACCCAACTGCTGTTGCTGCGACTCACCCTCCTTATGCTGAGATGATATACAAAGCAATAGAGGCGCTGAATGAGAAAGATGGGTCGAGCAAACGAGCCATTGGGAAGTACATAGAGCAAGTCTACAGGGACCTTCTTCCACCAGCTCACTCAACCTTGTTGACTCACCACCTCAAACGCTTGAAGACTACCGGTCTTCTCGTTATGGTCAAAAAATCTTACAAGCTCCCTCCCCCTAGATCTACTGTTTCTCCCACTCCCAAGCCCAACCACCAACCCGTCTTCGTTGCGCTGGGCCTTGCGGATGAGCCTCCTGTCAAAAAGCCCGGCAGAAGAGGCCGCCCACCCGGATCTAAGTTGCCTAAGAGGCCCGGCCGTCCTCCAAAGCCCAAATCCCTTTCCGGAATCTCCAATGGGCTCAAGCGACGTCCGGGCCGCCCGCCCAAATTCCAATCACAACCCACTGTAATCCCCTTCGCTGCTCCCGCTCCTGGTGAGCCCGCAGGGTTGACGACCGTACCCGTTGGATCTCCGAGGCCCAGAGGACGGCCCAGGAAGAATGTAGCTGCAGTGCCGGGTGTGGGAGCTATTGCACCACCTGCCGGCCCGGTGGTGAGGCCGGGTCGTCCTCCGAAGCTTCCCATTGTAGGGAGGCCCAAGAATCCCATCAGAAGGCCCGTGGGCCGCCCAAAGGGAGCAACAGCTGCTGCTACTTTGGCGCGTAAGGTTGCTAATGATGATCTAAGGAGGAAAGTGGAGTACTTTCAATCAAAAGTGAAGGAATCTGTTGATGTGCTAAAGCCTTATTTTAATCATGAAAGTCCAGTGACTACAATTGCAGCAATCCAAGAGTTGGAAATACTTGCAACTTTGGATCTTAAAGCACCATTAAGGGATGCAACACAGAAATTTCCACCACAGCAACAGCTGCAGCCAGAGCCAGAGCCACAGCCACAGATGTATCAACAATATCTCCAGATACCACCGCAGCCTTAA 1110 0.5414 MEQPTWIPHPPPPTTTVTTVPFIVEPINHEPPAANNFPNPTAVAATHPPYAEMIYKAIEALNEKDGSSKRAIGKYIEQVYRDLLPPAHSTLLTHHLKRLKTTGLLVMVKKSYKLPPPRSTVSPTPKPNHQPVFVALGLADEPPVKKPGRRGRPPGSKLPKRPGRPPKPKSLSGISNGLKRRPGRPPKFQSQPTVIPFAAPAPGEPAGLTTVPVGSPRPRGRPRKNVAAVPGVGAIAPPAGPVVRPGRPPKLPIVGRPKNPIRRPVGRPKGATAAATLARKVANDDLRRKVEYFQSKVKESVDVLKPYFNHESPVTTIAAIQELEILATLDLKAPLRDATQKFPPQQQLQPEPEPQPQMYQQYLQIPPQP* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00070 369 MobiDBLite consensus disorder prediction 239 273 - -
Rops2g00070 369 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 46 116 IPR005818 GO:0000786|GO:0003677|GO:0006334
Rops2g00070 369 MobiDBLite consensus disorder prediction 337 369 - -
Rops2g00070 369 SUPERFAMILY "Winged helix" DNA-binding domain 45 117 IPR036390 -
Rops2g00070 369 MobiDBLite consensus disorder prediction 340 369 - -
Rops2g00070 369 PANTHER HISTONE H1 29 250 - -
Rops2g00070 369 MobiDBLite consensus disorder prediction 241 255 - -
Rops2g00070 369 Pfam linker histone H1 and H5 family 47 110 IPR005818 GO:0000786|GO:0003677|GO:0006334
Rops2g00070 369 PRINTS AT-hook-like domain signature 177 188 IPR017956 GO:0003677
Rops2g00070 369 PRINTS AT-hook-like domain signature 214 224 IPR017956 GO:0003677
Rops2g00070 369 PRINTS AT-hook-like domain signature 159 169 IPR017956 GO:0003677
Rops2g00070 369 CDD H15 44 126 IPR005818 GO:0000786|GO:0003677|GO:0006334
Rops2g00070 369 FunFam Histone H1.2 43 124 - -
Rops2g00070 369 Gene3D - 43 125 IPR036388 -
Rops2g00070 369 SMART AT_hook_2 147 159 IPR017956 GO:0003677
Rops2g00070 369 SMART AT_hook_2 216 228 IPR017956 GO:0003677
Rops2g00070 369 SMART AT_hook_2 179 191 IPR017956 GO:0003677
Rops2g00070 369 SMART AT_hook_2 262 274 IPR017956 GO:0003677
Rops2g00070 369 MobiDBLite consensus disorder prediction 138 225 - -
Rops2g00070 369 SMART h15plus2 44 111 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00070 Rops-Chr2 1183150 1184897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00070 53 130 Single Myb Histone (SMH) Gene Family AT1G49950 38.462 3.63e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00070 - - gmx:100802941 300.441
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00070 2 1183150 1184897 Rops2g00070 2 1183150 1184897 ECH