Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00059 ATGTGGATGGTGGGTTACAATGAAGGTGGTGACTTTAACATGGCTGATTATGCATTCAATGGAAGGAAACTCAGGCCACTCATGCCAAGGCCAGTGACTTCTCCACACAACACTTCAGCTACAAACACTCCTTGCTTAAGCCGCATTCATGGCAATGATTTCTTTTCACAATATCATAACCTGGCATCAGTTACAGAGCAGAGCAAGAGAGAGTTCAATACTCCACCAGTTGTGGTGAGTTCAAGGTGGAATCCTACCCCAGAACAGCTAAGAGCACTGGAAGAATTGTATAGAAGAGGAACAAGAACACCATCTGCGGAGCAAATCCAACAAATCACTGCACAGCTTAGAAGGTTTGGAAAGATTGAAGGGAAGAATGTTTTCTATTGGTTTCAGAATCACAAAGCAAGGGAAAGGCAGAAACGCCGCCGTCAAATGGAATCAGCTGCTGAGGGTCACCCCCGTGACTTGGATAGTACTCTTGAAAAGAAAGACTTAGGCGCAAGTAGGACAGTGTTTGAAGTTGAACAGACCAAGAACTGGGCACCCTCTACAAACTGCAGTACTCTTGCAGAGGAATCTGTTTCAATTCAAAGGGCAACAAAAGCAGCTATTGCAGAGTGTAGAACAGATGGATGGCTCCAATTCGATGAAGGAGAATTACTACATCAAAGAAGAAACTTTATGGAAAGGAATGCCACGTGGCACATGATGCAGTTACCTTGTCCTCCCCCTCACCCCATAAACACACCTCATAACACCTATACAACTAGCATGGCCACCACAACCACTGTAACAGCTAGAGTAATGGACCCAAAACTCATTAAGACCCATGATCTCAGCTTCTTCATTTCACCTCACAGAGAAAACGGTATTATCCACTTAAGCAGTGTCAGCACTGAGGATGATAACTTTGTGGAATCTCAAACCCTTCAACTTTTCCCAATAAGGCATGGGGATGGCAGCAGCGATAACATTAACCAACAAAAAGAGACAGAGATATCAGCTTCAGCAATGAATGCACCGAGCCAGTTTTTTGAGTTCCTTCCATTGAAGAACTGA 1062 0.4416 MWMVGYNEGGDFNMADYAFNGRKLRPLMPRPVTSPHNTSATNTPCLSRIHGNDFFSQYHNLASVTEQSKREFNTPPVVVSSRWNPTPEQLRALEELYRRGTRTPSAEQIQQITAQLRRFGKIEGKNVFYWFQNHKARERQKRRRQMESAAEGHPRDLDSTLEKKDLGASRTVFEVEQTKNWAPSTNCSTLAEESVSIQRATKAAIAECRTDGWLQFDEGELLHQRRNFMERNATWHMMQLPCPPPHPINTPHNTYTTSMATTTTVTARVMDPKLIKTHDLSFFISPHRENGIIHLSSVSTEDDNFVESQTLQLFPIRHGDGSSDNINQQKETEISASAMNAPSQFFEFLPLKN* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00059 353 MobiDBLite consensus disorder prediction 139 161 - -
Rops2g00059 353 MobiDBLite consensus disorder prediction 142 161 - -
Rops2g00059 353 FunFam WUSCHEL-related homeobox 4 80 147 - -
Rops2g00059 353 Pfam Homeodomain 81 140 IPR001356 GO:0003677
Rops2g00059 353 ProSiteProfiles 'Homeobox' domain profile. 86 141 IPR001356 GO:0003677
Rops2g00059 353 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 66 347 IPR044555 GO:0003700|GO:0099402
Rops2g00059 353 Gene3D - 79 141 - -
Rops2g00059 353 SMART HOX_1 78 145 IPR001356 GO:0003677
Rops2g00059 353 SUPERFAMILY Homeodomain-like 81 147 IPR009057 -
Rops2g00059 353 CDD homeodomain 82 142 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00059 Rops-Chr2 1017793 1020420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00059 1 353 Wox Gene Family AT3G18010 42.416 1.74e-71 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Rops2g00059 Homeodomain 9.5e-20 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00059 2 1017793 1020420 Rops2g00059 2 1017793 1020420 ECH