Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00047 ATGAAGATGACAACGACGGTACAAATGTCAGAATATGAACCCTTTCACGACCAAAACCAATTGTCGGTGCCAAAGAAGCATACACCAATGATGGAGGCGGCAACGCATAAGCCAAAATGTGAATCCCTCCACGACCAGAACCCATCAATGGTGCTGAAGGAGGAGCATACGCTGACGATGGAGGTGGCGAATAGGCTGGAACATGCGAACTAGGGAGGACTCATCTGGTGGACTAGAAGAAGAAACAGACATGACCGGGGCAGGTTGTTTCTGCTCTCACCAATTCATATATCATCTTCTTCTTCTTCATTCTCATTCTCAATACCAACTATGTCTTCTCTCTTAGATGAGTGCAGGGAGCACTTGTTGCAGTTGGATGGCTACGCTAATGGAAATGGAGAGCACACCAAACCCAAATTCCAGATAAGAAATCTTAGCAGAGTCTCTGACGATGGAGTTCCCATACTCAAAGCTATCAACTTGGACATTCCAAAGGGAGTGATCGTTGGGGTCATAGGCCCCAGTGGCAGTGGAAAGTCAACGCTCTTGAGGGCCCTCAACCGCCTCTGGGAGCCACCCTCCTCCTCCGTCTTCCTCGACGGCCACGACATCTCCGATCTCGACGTTCTCTCCCTCCGCCGTAAGGTTGGGATGCTCTTTCAGCTCCCTGCTCTCTTTGAAGGCACAGTTGCAGACAATGTTAGGTATGGTCCACAACTGAGAGGGAAAAAGCTATCAGATGATGAGGTGCGTCAGTTGCTAATAATGGCAGACCTAGATGCTTCTTTCATGGACAAGTCCGGTGCTGAGCTCTCTGTGGGTCAAGCTCAAAGAGTTGCACTTGCTAGGACTTTAGCTAATTCACCTGAGGTTTTGCTGCTGGACGAGCCAACTAGTGCGTTAGATCCAATATCCACAGAGAACATAGAGCATGCCCTGATGAAGCTGAACAAGAATAGGGGCATAACACTGATCATGATCTCTCATAGCGTCAAACAAATCCAGAGGATAGCTGACATAGTGTGCCTGCTTGTTGATGGTGAAATTGTTGAAGTTCTGAAGCCTGATCAACTCTCTGAAGCCAAGCATCCCACGGCACAAAGGTTTCTTGAACTCAGTTCTTAG 1125 0.4827 MKMTTTVQMSEYEPFHDQNQLSVPKKHTPMMEAATHKPKCESLHDQNPSMVLKEEHTLTMEVANRLEHAN*GGLIWWTRRRNRHDRGRLFLLSPIHISSSSSSFSFSIPTMSSLLDECREHLLQLDGYANGNGEHTKPKFQIRNLSRVSDDGVPILKAINLDIPKGVIVGVIGPSGSGKSTLLRALNRLWEPPSSSVFLDGHDISDLDVLSLRRKVGMLFQLPALFEGTVADNVRYGPQLRGKKLSDDEVRQLLIMADLDASFMDKSGAELSVGQAQRVALARTLANSPEVLLLDEPTSALDPISTENIEHALMKLNKNRGITLIMISHSVKQIQRIADIVCLLVDGEIVEVLKPDQLSEAKHPTAQRFLELSS* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00047 373 ProSitePatterns ABC transporters family signature. 270 284 IPR017871 GO:0005524|GO:0016887
Rops2g00047 373 PANTHER ABC TRANSPORTER I FAMILY MEMBER 17 111 372 IPR005670 GO:0005315|GO:0016020|GO:0035435
Rops2g00047 373 Gene3D - 137 372 IPR027417 -
Rops2g00047 373 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 139 370 IPR003439 GO:0005524
Rops2g00047 373 CDD ABC_PstB_phosphate_transporter 139 357 IPR005670 GO:0005315|GO:0016020|GO:0035435
Rops2g00047 373 SMART AAA_5 164 355 IPR003593 GO:0016887
Rops2g00047 373 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 139 359 IPR027417 -
Rops2g00047 373 Pfam ABC transporter 155 298 IPR003439 GO:0005524
Rops2g00047 373 FunFam ABC transporter, ATP-binding protein 136 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00047 Rops-Chr2 886746 889972 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00047 152 357 Calmodulin-binding Proteins AT2G36910 35.321 7.73e-30 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00047 K02068 - gmx:100791365 415.616