Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00033 ATGCTTGAGGTGCAAGGAGTCCAATCCCTATATAAACGCTTCTCCCTTCCCCACTCCTCACTAACTTCCATTTTCGGGTCTCCAAATATCACACACAACACAACTACAACATCAACATCGACATCGACAACCTCAATCAGGGTTACGTTGGAGACGAATCGAGGTAGAGACAGGATGAGCTTGCCACGGAGGGACAGGTACAGGGTTCCTCGTCAGGAATGGGTTCCTAGAGCATCCCCCATTGCCACAGCCACCGCCACAGCCAACGGTGACCGGCAGTCACATTCGAATGTTGATGTTGGTTGCTCCAATCCTCCAACCAGTAGGCATAGTCGGGTATTGAATCTGAAGGGCCGTGATTTACCTCAACTGGTGCAAGAGATTCAGGAAAAGCTCACGAAAGGCGCTGTGGAATGCATGATTTGCTATGACACGGTGCGGAGGTCGGCACCTATCTGGTCATGCTCCAGTTGCTTCTCTATCTTTCACCTTAATTGTATAAAGAAGTGGGCTCGAGCACCCACTTCCGTTGATTTGTCTGCAGAGAAAAATCAAGGGTTTAATTGGCGCTGCCCTGGTTGTCAATCTGTGCAGCTCACATCAATCAAGGAGATTATGTATCTTTGCTTCTGTGGTAAGAGGCAAGACCCACCATCAGACTTGTATCTCACACCACATTCCTGTGGAGAACCATGCGGGAAGCCTCTTGAGAGGGACCTTTTTGCCGCTGAGCGGAATAAGGAGGATATTTGCCCTCATCTTTGTGTCTTGCAATGCCATCCGGGTCCATGCCCTCCTTGCAAGGCATTTGCTCCACCACGTTTGTGTCCTTGTGGGAAGCAAAATATTACCACTCGTTGCTCTGACCGCCATTCTCTTCTTACCTGTGGCCGCAACTGCAATAAGCTTCTTGAATGTGGGCGTCATCGGTGTGATCGAATTTGTCATCAGGGTCCTTGTGATCCTTGCCATGTTCCGATCAATGCCTCTTGCTTTTGCAGTAAGAAAATGGAGGTTATTCTTTGTGCGGACATGGCTGTGAAGGGTGACTTCAAAGCAGAAGGTGGAGTTTTTTCCTGTGGTTCCATTTGTCAAAAGAAACTTAGTTGTGGTAATCATATCTGTATGGAGACTTGTCATCCAGGCTGCTGTGCAGAGTGTGACTTATTACCAACCCGTATTAAGACATGCTGTTGTGGGAAAACTAGATTGGAGGAGGAACGGCAGAGTTGTTTAGACCCAATACCGACCTGTTCACAAGTATGTGGCAAGTCCCTGCCTTGCGGGATGCATCATTGTAAAGAGGCATGCCATGCTGGGGATTGTTCTCCTTGTTTGGTACTGGTCTCCCAGAAGTGTCGATGTGGCTCAACTTCCCGAACGGTGGAGTGCTATAAGACAACAACAGAGAATGAGAAATTTACTTGTGAAAAGCCTTGTGGACAGAAGAAGAATTGTGGAAGGCATCGATGTAGTGAACGGTGTTGTCCACTTTCTAATCCAAATAATATTCTAAATGGGGATTGGGATCCACACTTATGTTCCATGTCATGTGGGAAGAAGTTAAGGTGTGGGCAGCATGCGTGTGAATCCCTGTGTCACAGTGGTCATTGTCCACCTTGCCTGGAAACAATATTCACTGATTTGACATGTGCTTGTGGCAGGACTTCAATCCCTCCTCCATTGCCTTGTGGTACACCACGTCCTTCATGTCAACTTCCATGTTCAGTTCCTCAGCCTTGTTGCCATCCAGCCTCCCACAGCTGCCATTTTGGAGATTGTCCTCCTTGTTCAGTGCCTGTAGCAAAAGAATGTATTGGTGGGCACGTAATTCTTAGGAACATACCTTGTGGTTCAAAGGATATTAGATGTAATAAGCTATGTGGGAAGACTAGACAATGTGGTTTACATGCTTGTGGCAGAACATGTCACGCCCCACCTTGTGATAACCAATCTACTGTGCAAGGTACCCGAGCTTCTTGTGGTCAAACATGTGGTGCTCCAAGGAGAGACTGCCGGCATACATGTACAGCTCCTTGTCACCCTTCATCTCCATGTCCAGATATAAGATGTGAATTCCCTGTCACAATTACTTGTTCTTGTGGCCGAATAACAGCAAATGTTCCTTGTGATGCTGGTGGTAGCGGTGCTAATTATAATGCAGATGCCATACATGAAGCTTCCATTGTTCAGAAGTTGCCTGTGCTGCTTCAACCTGTGGATACAAATGGCAAAAGAGTTCCCCTTGGACAAAGAAAACTGATGTGTAACGATGAGTGTGCTAAGTTGGAGCGTAAAAGGGTTCTTGTAGATGCTTTTGAGATTACCGCTCCAAATCTGGATTCTCTCCATCTTGGTGAGAATTCTATGGCTTCTGAGTTGCTTGGTGATATGTTGAGACGTGATCCTAAATGGGTTTTATCAGTTGAGGAGAGATGCAAGTTTTTAGTACTTGGCAAGAGCAGAGGAACTGCACATGGTCAAAAAGTCCATGTTTTCTGTCCTATGCTAAAGGATAAGAGAGATGCAGTGAAGGTGATTGCCGAGAGATGGAAGCTTGCGGTGAATGCAGCTGGTTGGGAGCCAAAGCGTTTTATTGTTGTTCATGTTACCCCAAAATCAAGAGTTCCTGCACGTGTGCTAGGGGTTAAGGGTACTACAACTGTAAATGCACCCCTTCCTCCTACATTTGATCCTTTGGTAGACATGGACCCTCGACTTGTGGTCTCTTTTCCAGACTTACCAAGGGATGCAGATATTAGTGCATTGGTGTTGAGATTTGGTGGTGAGTGTGAACTTGTTTGGTTAAATGACAGAAATGCATTGGCTGTTTTTAATGATCCTGCCCGAGCTGCAACTGCAATGAGAAGGTTGGATCATGGAACTGTTTATCAGGGAGCTGTTGTGGTTGTTCAGAATGTTGGGGCATACGTAGCATCTTCAGCTACTAACGCCTGGGGAGGAGCTGGGACAATAAAAGGAGGTGCACTGGCAGCATTAAAGGGTAATGATCCGTGGAAAAAGGCTGTTGTTCAAGAGACAGGTTGGAAAGAAGATTCTTGGAGTGATGTAGAGTGGGCTACTGGTTCTGCTAATATCCAGCCTTCTGTTTGGAAGAAAGAAGCACCAATATCTGCTTCATTAAATCCTTGGGGTGTCTTAGATCAGGAATCGTCTTCAAGTTCATCTGTTGCACCCGTTAAAGCTGAAGTTTCTAGGAAACATTCTGAAAGTAGTGCTGTCACAAAGTTGGAGGGTGGTTCAAATCTAGTAGGTCAGAATGGTGGAAACATTGACGCATTGGAAGTTTCTGATGTAGTAGATGATTGGGAGAAGGCTTATGAATGA 3348 0.4615 MLEVQGVQSLYKRFSLPHSSLTSIFGSPNITHNTTTTSTSTSTTSIRVTLETNRGRDRMSLPRRDRYRVPRQEWVPRASPIATATATANGDRQSHSNVDVGCSNPPTSRHSRVLNLKGRDLPQLVQEIQEKLTKGAVECMICYDTVRRSAPIWSCSSCFSIFHLNCIKKWARAPTSVDLSAEKNQGFNWRCPGCQSVQLTSIKEIMYLCFCGKRQDPPSDLYLTPHSCGEPCGKPLERDLFAAERNKEDICPHLCVLQCHPGPCPPCKAFAPPRLCPCGKQNITTRCSDRHSLLTCGRNCNKLLECGRHRCDRICHQGPCDPCHVPINASCFCSKKMEVILCADMAVKGDFKAEGGVFSCGSICQKKLSCGNHICMETCHPGCCAECDLLPTRIKTCCCGKTRLEEERQSCLDPIPTCSQVCGKSLPCGMHHCKEACHAGDCSPCLVLVSQKCRCGSTSRTVECYKTTTENEKFTCEKPCGQKKNCGRHRCSERCCPLSNPNNILNGDWDPHLCSMSCGKKLRCGQHACESLCHSGHCPPCLETIFTDLTCACGRTSIPPPLPCGTPRPSCQLPCSVPQPCCHPASHSCHFGDCPPCSVPVAKECIGGHVILRNIPCGSKDIRCNKLCGKTRQCGLHACGRTCHAPPCDNQSTVQGTRASCGQTCGAPRRDCRHTCTAPCHPSSPCPDIRCEFPVTITCSCGRITANVPCDAGGSGANYNADAIHEASIVQKLPVLLQPVDTNGKRVPLGQRKLMCNDECAKLERKRVLVDAFEITAPNLDSLHLGENSMASELLGDMLRRDPKWVLSVEERCKFLVLGKSRGTAHGQKVHVFCPMLKDKRDAVKVIAERWKLAVNAAGWEPKRFIVVHVTPKSRVPARVLGVKGTTTVNAPLPPTFDPLVDMDPRLVVSFPDLPRDADISALVLRFGGECELVWLNDRNALAVFNDPARAATAMRRLDHGTVYQGAVVVVQNVGAYVASSATNAWGGAGTIKGGALAALKGNDPWKKAVVQETGWKEDSWSDVEWATGSANIQPSVWKKEAPISASLNPWGVLDQESSSSSSVAPVKAEVSRKHSESSAVTKLEGGSNLVGQNGGNIDALEVSDVVDDWEKAYE* 1116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00033 1115 CDD NF-X1-zinc-finger 296 344 - -
Rops2g00033 1115 ProSiteProfiles Zinc finger PHD-type profile. 136 197 IPR019787 -
Rops2g00033 1115 CDD NF-X1-zinc-finger 228 289 - -
Rops2g00033 1115 CDD RING-CH-C4HC3_NFX1-like 138 195 - -
Rops2g00033 1115 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 100 1023 IPR034078 GO:0003700
Rops2g00033 1115 SUPERFAMILY RING/U-box 129 199 - -
Rops2g00033 1115 MobiDBLite consensus disorder prediction 1055 1098 - -
Rops2g00033 1115 Pfam NF-X1 type zinc finger 306 323 IPR000967 GO:0005634|GO:0008270
Rops2g00033 1115 Pfam NF-X1 type zinc finger 589 598 IPR000967 GO:0005634|GO:0008270
Rops2g00033 1115 Pfam NF-X1 type zinc finger 253 268 IPR000967 GO:0005634|GO:0008270
Rops2g00033 1115 Pfam NF-X1 type zinc finger 486 497 IPR000967 GO:0005634|GO:0008270
Rops2g00033 1115 Pfam NF-X1 type zinc finger 524 541 IPR000967 GO:0005634|GO:0008270
Rops2g00033 1115 Pfam NF-X1 type zinc finger 428 445 IPR000967 GO:0005634|GO:0008270
Rops2g00033 1115 Pfam NF-X1 type zinc finger 370 387 IPR000967 GO:0005634|GO:0008270
Rops2g00033 1115 Pfam NF-X1 type zinc finger 634 649 IPR000967 GO:0005634|GO:0008270
Rops2g00033 1115 Pfam NF-X1 type zinc finger 665 690 IPR000967 GO:0005634|GO:0008270
Rops2g00033 1115 ProSiteProfiles Zinc finger RING-type profile. 139 195 IPR001841 -
Rops2g00033 1115 MobiDBLite consensus disorder prediction 86 109 - -
Rops2g00033 1115 MobiDBLite consensus disorder prediction 1081 1095 - -
Rops2g00033 1115 SMART znfxneu3 370 389 IPR000967 GO:0005634|GO:0008270
Rops2g00033 1115 SMART znfxneu3 251 269 IPR000967 GO:0005634|GO:0008270
Rops2g00033 1115 SMART znfxneu3 524 543 IPR000967 GO:0005634|GO:0008270
Rops2g00033 1115 SMART znfxneu3 306 325 IPR000967 GO:0005634|GO:0008270
Rops2g00033 1115 SMART znfxneu3 634 663 IPR000967 GO:0005634|GO:0008270
Rops2g00033 1115 SMART znfxneu3 672 693 IPR000967 GO:0005634|GO:0008270
Rops2g00033 1115 SMART znfxneu3 486 516 IPR000967 GO:0005634|GO:0008270
Rops2g00033 1115 SMART znfxneu3 428 447 IPR000967 GO:0005634|GO:0008270
Rops2g00033 1115 SMART znfxneu3 581 599 IPR000967 GO:0005634|GO:0008270
Rops2g00033 1115 CDD NF-X1-zinc-finger 418 466 - -
Rops2g00033 1115 CDD NF-X1-zinc-finger 514 566 - -
Rops2g00033 1115 CDD NF-X1-zinc-finger 571 619 - -
Rops2g00033 1115 CDD NF-X1-zinc-finger 360 405 - -
Rops2g00033 1115 CDD NF-X1-zinc-finger 661 710 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00033 Rops-Chr2 709530 713537 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Rops2g00033 zf-NF-X1 1.1e+02 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00033 K12236 - gmx:106799700 1856.26