Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00029 ATGTGTCAGTCTGAGGATAACGGTATAAGGTTAATGGCTAAAAGGATGAAAAAGAAATATGATAAGTATTGGGGAAAACCTGACAATCTAAACATGTTGTTATTAATTGCTGTCGTGTTAGACCCCCGATACAAATTGAAGTTTGTAAATTGGTTTATCAGTCAAGCTTTTGATTCTGTAGATGCAATTTATTTGCAAAGTAAGTTAGAGTCTTGCTTGAAGTCACTCTTTGAGGAGTATCATGGTGGGGTGCGGGGGTCTCAAAGGGACTCACAAGAAACGCGAGTTAATGTGACAGGTAAAAGGGATCGCTATGACATTAATCTGTTTTTCCAATCAGTTGGGGGCATATCAGGTTCCAAATCTGAGTTGAGTCAGTACTTGGAAGAAGCCCTACATAGCCCTGATGATTTGGATTTGGATGTCTTAAGTTGGTGGAAGATAAACTCGAGCCGGTTTCCAATCCTTGTAAACATTGCAAGAGAGGTGTTGGCTATACCTGTTTCTACTGTGGCATCTGAAGTCGCCTTTAGTACTGGTGGAAGGGTGCTCGATTCTTATCGCAGCTCCCTAACACCTACAATGGTGGAAGCACTTATTTGTCACCCTTGGATTCAGGTTGATGGAGTTGCTCCAGATAAGCCCCTTGATTTTGCAGTTTTGAGTCGCCTGAAGCTATCAAACTTTCTGGTATTTGGTTTGCAGAATACAGACTCAGTCTTGTTTGTGATCCAACTCCTCCTTCGGAGTATAGAAGCAGCACTACCGAAACAGAAAAAGAATGTTGCTCTAGCAGAATTTAAGCATGCGATGGTTGCTCATAAGAGGCGCCGTGAGGGAACACCAACCACTGATGGAGAAGGGAAAACTGAAATACAAGGTAGTCTAGTTTCCAAAGAAATCGCAGCTTCTAACAAGATGATGCCAGTTGCCCCTGCTAGTGTTGCAGGACAATTAGTTGGACATAATGAGCATGAGTTGAAGCGTGAGAGGAGGAAACAGTCAAATCGAGAATCTGCCAGGAGGTCCAGACTAAGGAAGCAGAGGGCAACACCTGTAAGTACAGAGAACTTATTATCAAGAGTCAATAATTCCGGTTCTAATGATAGGACTGCAGATGATCAGAATGATTTTTGTGACAACAAACCAAACTCTGGTGCAAAGCTGCATCAACTCCTGGATGCTAGTCCTAGAGCTGATGTTGTGGCAGCTGGTTGA 1218 0.4286 MCQSEDNGIRLMAKRMKKKYDKYWGKPDNLNMLLLIAVVLDPRYKLKFVNWFISQAFDSVDAIYLQSKLESCLKSLFEEYHGGVRGSQRDSQETRVNVTGKRDRYDINLFFQSVGGISGSKSELSQYLEEALHSPDDLDLDVLSWWKINSSRFPILVNIAREVLAIPVSTVASEVAFSTGGRVLDSYRSSLTPTMVEALICHPWIQVDGVAPDKPLDFAVLSRLKLSNFLVFGLQNTDSVLFVIQLLLRSIEAALPKQKKNVALAEFKHAMVAHKRRREGTPTTDGEGKTEIQGSLVSKEIAASNKMMPVAPASVAGQLVGHNEHELKRERRKQSNRESARRSRLRKQRATPVSTENLLSRVNNSGSNDRTADDQNDFCDNKPNSGAKLHQLLDASPRADVVAAG* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00029 405 PANTHER BED FINGER-RELATED 5 202 IPR045259 -
Rops2g00029 405 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 331 346 IPR004827 GO:0003700|GO:0006355
Rops2g00029 405 MobiDBLite consensus disorder prediction 274 294 - -
Rops2g00029 405 Pfam hAT family C-terminal dimerisation region 123 201 IPR008906 GO:0046983
Rops2g00029 405 Gene3D - 327 378 - -
Rops2g00029 405 Pfam bZIP transcription factor 324 350 IPR004827 GO:0003700|GO:0006355
Rops2g00029 405 MobiDBLite consensus disorder prediction 316 405 - -
Rops2g00029 405 SUPERFAMILY Ribonuclease H-like 9 202 IPR012337 -
Rops2g00029 405 Pfam Domain of unknown function (DUF4413) 2 80 IPR025525 GO:0003677
Rops2g00029 405 CDD bZIP_plant_GBF1 329 363 IPR045314 GO:0003700|GO:0006355
Rops2g00029 405 MobiDBLite consensus disorder prediction 350 382 - -
Rops2g00029 405 MobiDBLite consensus disorder prediction 322 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00029 Rops-Chr2 661246 664389 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00029 275 405 bZIP Transcription Factor Family AT2G46270 38.547 1.16e-16 79.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Rops2g00029 Dimer_Tnp_hAT 2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00029 - - psat:127127654 234.187