Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00028 ATGCACGGCGGTGACGGAGGAAGGAGGCAGAGGAGAAGAGACTTGGGGCATTGTGACGACGGAGTATGGCGGCAATTTGTGATTCATCCTGATAACCGGTGGTACGTGGCGTGGAAGCACTTCATATTGATATGGGCAGTGTACTCATCGTTCTTCACCCCAATGGAGTTCGGTTTCTTCAGAGGCTTGCCGGAGAAGATCTTCTTGCTAGACATCGCCGGCCAATTCGCTTTCCTCATGGACATTGTGGTCAGATTCTTGGTTGGCTATCGTGACATCCACTCCTACTGCGTGGTGGATGATCGCAATCAAATAGCCATGAGGTACATCAAGTCTCGTTTCATCACTGATCTTCTCAGCTGTCTCCCCTGGGATTTTATATACAGGGTTAGTGGGAAGAAAGAGGTGGTGAGATATATGCTGTGGATCAGGCTAAGCCGAGCTTGCAGAGTGACAGAGTTTTTCGAGAGGCTGGAGAAGAATATAAAGGTGAATTACCTGTTTACGAGGATTGTGAAACTTCTGGTAGTTGAACTGTACTGCACCCACACGGCTGCATGCATCTTCTACTATCTTGCTACCACCATGCCCCCCTCCAAGGAAGCTTACACCTGGATTGGCTCCTTGAAGATGGGTGACTACGCCTATTCTGACTTCAGACACATCGATCTCTGGAAGCGTTACATCACCTCACTCTACTTTGCAATTGTTACCATGGCCACTGTTGGCTATGGAGACATTCATGCAGTCAATGTCAGAGAAATGATATTCATCATGATTTATGTCTCCTTTGACATGATTCTCGGTGCTTACCTTCTTGGCAATATGGCTGCTTTGATTGTCAAAGGATCAAAAACAGAGAGGTTCAGGGATAAAATGACCGAGATTATGAAGTACACGAATAAAAACAATTTGGACAAGCGTATAACTAGTGCCATCAAAGATCATTTGCGCCTACAGCGAATTGGTTTTTTGTCAGAATGTACTTTGAGAAATGCCATTCCTGTGAGGCAAAGAGTTGCTGTTTGTCTTTGGAGGTTGGCAACTGGTGATCCTCTTAGGCTTGTGCCAAAGAGGTTTGGTTTAGGGATATCAACTTGTCATAAACTGGTTCTTGAGGTTTGCACTGCAATTAAGACTGTGTTGATGCCAAAGTATCTTCAATGGCCTGATGAGGTTGCATTGAGGAAGATTAAAGGTGAATTTGAGTCCATTTCTGGGATTCCTAATGTGGTGGGGTCCATGTATACCTCACATGTTCCCATCATAGCTCCAAAGATTAGTGTGGCAGCTTATTTCAACAAGAGGCACACTGAGAGGAATCAGAAGACTTCTTATTCAATTACTGTCCAGGGTGTTGTTGATCCAAGAGGGGTGTTCACTGATGTTTGCATTGGTTGGCCTGGATCATATCCTGATGATCAGGTGTTGGAAAAATCTGCTCTTTATCAAAGGGCTAATGGGGGGCTTCTCAAAGGTGTGTGGATTGTTGGGAGTTCAGGGTACCCTTTGATGGATTGGGTTTTGGTGCCTTATACTCAGCAGAATCTTACTTGGACTCAGCATGCTTTCAACGAGAAGATTGGAGAGATTCAGAAGGTTGCAAAGGATGCATTTGCTATATTGAAAGAGAGGTGGTGTTGCCTGCAGAAGAGGACAGAGATTTCATTAACTCTGTACGAGCCCTTCCTTCAGAAAGTTCCCCTTTTCAAGGGATGCTCTTCAGCTTTTATTAAGCAGATTGCAACCAAAATCCATGAAGAGTTTTTCCTCCCAGGAGAATTGGTTATCGAGCAAGGAGATGTACCAGATCAACTTTACTTTGTTTATCATGGTGAGCTGCATGATATTAGGAGGGTAGATGGTGATCCACAAGAGACAATCACATTGCATGCCTATAGTTCCTTCGGCGAGGTTTCTTTTCTTTGCAATATGCCTCCAACTTCCATGGTTCAAGCTCATGAATTTTGCAAGGTTTTGCGACTTGATAAGAAATCATTTTCAGATATACTGAAGATATACTTTTTAGATGGCCGTATTATCTTGAACAATCTCCTTGAGGTAAAAGACTCTAGTCAAAGGCGTAAGCTTTTGGAATCAGACTTCAACCTGACTATTCGGAACCAGGAAACAGAGCTAGCTATGAGGATGAATTGTGCTGCCTATGGTGGTCACCTTGACATTTTGAAAGGTTTGATTGCATCAGGGGCAGATCCCAATAAGACTGATTATGATGGCAGATCACCCTTGCATATCTCAGCATCAAAAGGATTTGTAGATATTTCTTACTTTCTTGTTGAACAAGGAGTAAATATCAATATTGCAGATAAATTTGGGACTACTCCCCTGCTTGAAGCCATCAAGAATGGACATGAAGAAGTAGCATCATTACTTATTAATGCGGGAGCTACCCTTACTATTGATGATGTTGGCAATTTTCTCTGCATGACTGTTGCAAAGCAGGAGTTGGATATCTTAAAAAATGTTTTGGCTTGTGGAATTAATCCAAATTCCAAAAATTATGATCAGCGTACACCTCTTCACATAGCTGCCTCTGAAGGTTTGTGTACAATGGCTGAATTACTTCTAGAAGCTGGAGCAAGTGTTTTGTCTAAGGACAGATGGGGAAATACACCGCTTCGTGAAGCTCGTACAGGTGGAAATAGAACTGTCATCAAAATGCTTGAAGTTGCCAAAGTCTCTCAGTTGGCTGAGTTATCCAATAGTATTCAAGAAACTCCAGCAACACTAATGTTGCCATCAACAGATGAAATTCCCAAAAAGAGATGTACTGTTTTTCCTTTCCATCCATGGGATCACAAAGAGGATAGAAGAGAGGGGGTGGTCCTATGGGTTCCACAAAGCATTGAGGAACTTATAAAGGTGGCAATGAAACATTTGGGAATTTCAAAAGGTTCCTGTGTTTTATCAGAGCAAGGTGGCAAAATTCTTCATGTAGACATGATTAACAAGGATGAAAAGTTATTTCTGGTAAGTGAGGGACAGGCATAG 3012 0.428 MHGGDGGRRQRRRDLGHCDDGVWRQFVIHPDNRWYVAWKHFILIWAVYSSFFTPMEFGFFRGLPEKIFLLDIAGQFAFLMDIVVRFLVGYRDIHSYCVVDDRNQIAMRYIKSRFITDLLSCLPWDFIYRVSGKKEVVRYMLWIRLSRACRVTEFFERLEKNIKVNYLFTRIVKLLVVELYCTHTAACIFYYLATTMPPSKEAYTWIGSLKMGDYAYSDFRHIDLWKRYITSLYFAIVTMATVGYGDIHAVNVREMIFIMIYVSFDMILGAYLLGNMAALIVKGSKTERFRDKMTEIMKYTNKNNLDKRITSAIKDHLRLQRIGFLSECTLRNAIPVRQRVAVCLWRLATGDPLRLVPKRFGLGISTCHKLVLEVCTAIKTVLMPKYLQWPDEVALRKIKGEFESISGIPNVVGSMYTSHVPIIAPKISVAAYFNKRHTERNQKTSYSITVQGVVDPRGVFTDVCIGWPGSYPDDQVLEKSALYQRANGGLLKGVWIVGSSGYPLMDWVLVPYTQQNLTWTQHAFNEKIGEIQKVAKDAFAILKERWCCLQKRTEISLTLYEPFLQKVPLFKGCSSAFIKQIATKIHEEFFLPGELVIEQGDVPDQLYFVYHGELHDIRRVDGDPQETITLHAYSSFGEVSFLCNMPPTSMVQAHEFCKVLRLDKKSFSDILKIYFLDGRIILNNLLEVKDSSQRRKLLESDFNLTIRNQETELAMRMNCAAYGGHLDILKGLIASGADPNKTDYDGRSPLHISASKGFVDISYFLVEQGVNINIADKFGTTPLLEAIKNGHEEVASLLINAGATLTIDDVGNFLCMTVAKQELDILKNVLACGINPNSKNYDQRTPLHIAASEGLCTMAELLLEAGASVLSKDRWGNTPLREARTGGNRTVIKMLEVAKVSQLAELSNSIQETPATLMLPSTDEIPKKRCTVFPFHPWDHKEDRREGVVLWVPQSIEELIKVAMKHLGISKGSCVLSEQGGKILHVDMINKDEKLFLVSEGQA* 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00028 1003 PRINTS EAG/ELK/ERG potassium channel family signature 180 190 IPR003938 GO:0005249|GO:0006813|GO:0016020
Rops2g00028 1003 PRINTS EAG/ELK/ERG potassium channel family signature 272 281 IPR003938 GO:0005249|GO:0006813|GO:0016020
Rops2g00028 1003 PRINTS EAG/ELK/ERG potassium channel family signature 71 81 IPR003938 GO:0005249|GO:0006813|GO:0016020
Rops2g00028 1003 PRINTS EAG/ELK/ERG potassium channel family signature 228 245 IPR003938 GO:0005249|GO:0006813|GO:0016020
Rops2g00028 1003 ProSiteProfiles Ankyrin repeat profile. 842 874 IPR002110 GO:0005515
Rops2g00028 1003 PANTHER POTASSIUM CHANNEL AKT1 14 320 IPR045319 GO:0005249|GO:0006813
Rops2g00028 1003 Gene3D Jelly Rolls 544 677 IPR014710 -
Rops2g00028 1003 ProSiteProfiles KHA domain profile. 929 1003 IPR021789 -
Rops2g00028 1003 SMART cnmp_10 569 686 IPR000595 -
Rops2g00028 1003 Pfam Ankyrin repeats (many copies) 830 881 IPR002110 GO:0005515
Rops2g00028 1003 CDD CAP_ED 569 682 IPR000595 -
Rops2g00028 1003 Pfam Ion transport protein 37 280 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Rops2g00028 1003 SUPERFAMILY Voltage-gated potassium channels 29 281 - -
Rops2g00028 1003 ProSiteProfiles Ankyrin repeat profile. 745 777 IPR002110 GO:0005515
Rops2g00028 1003 Pfam DDE superfamily endonuclease 416 557 IPR027806 -
Rops2g00028 1003 Gene3D - 818 897 IPR036770 -
Rops2g00028 1003 ProSiteProfiles Ankyrin repeat region circular profile. 745 777 - -
Rops2g00028 1003 SUPERFAMILY Ankyrin repeat 669 895 IPR036770 -
Rops2g00028 1003 Gene3D - 36 282 - -
Rops2g00028 1003 FunFam Potassium channel SKOR 36 281 - -
Rops2g00028 1003 Gene3D - 681 817 IPR036770 -
Rops2g00028 1003 SUPERFAMILY cAMP-binding domain-like 550 686 IPR018490 -
Rops2g00028 1003 Pfam Ankyrin repeats (3 copies) 719 808 IPR002110 GO:0005515
Rops2g00028 1003 ProSiteProfiles Ankyrin repeat profile. 778 810 IPR002110 GO:0005515
Rops2g00028 1003 ProSiteProfiles Ankyrin repeat region circular profile. 842 874 - -
Rops2g00028 1003 ProSiteProfiles cAMP/cGMP binding motif profile. 569 671 IPR000595 -
Rops2g00028 1003 SMART ANK_2a 778 807 IPR002110 GO:0005515
Rops2g00028 1003 SMART ANK_2a 842 871 IPR002110 GO:0005515
Rops2g00028 1003 SMART ANK_2a 809 838 IPR002110 GO:0005515
Rops2g00028 1003 SMART ANK_2a 712 741 IPR002110 GO:0005515
Rops2g00028 1003 SMART ANK_2a 745 774 IPR002110 GO:0005515
Rops2g00028 1003 FunFam Potassium channel KAT2 557 693 - -
Rops2g00028 1003 Pfam Cyclic nucleotide-binding domain 589 672 IPR000595 -
Rops2g00028 1003 Pfam KHA, dimerisation domain of potassium ion channel 928 997 IPR021789 -
Rops2g00028 1003 ProSiteProfiles Ankyrin repeat region circular profile. 778 809 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00028 Rops-Chr2 637642 645324 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00028 552 750 Ion Channels AT3G02850 57.500 3.19e-66 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00028 K21867 - gmx:100798698 707.983