LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops2g00027	ATGGTTTTTTTAGGATGGAGAAGAAGGAAGAAGAGCCGCAAAGCCAAGTTGCAAGAGCTGGTGACTCCTAACCAGTTCCAGTGCCCAATTTCTCTCGAGTTGATGAAGGATCCCGTCACATTATCTACTGGGATTACATATGATCGAGAAAGCATAGAAAGATGGTTTGATGAAGGGAATTACACGTGCCCCGTCACCAATCAGATTGTCAGCAACTTTGATCTCATTCCTAACCATGCACTTAGGATAATTATCCAAGATTGGTGTGTGCAAAATCGGCAACATGGGGTTGAAAGAATCCCAACCCCAAGAATACCCATTAGCCAAATGGAGGTAGCAGAGGTTGTTCTTCGTGTGAAGGCCTCAGCCTCAGCTTCAGCTAGACGTCTGGATCAACTAGGGTGCCTAGAATTGGTGCAGAAAATTGAGAGGTGGGGTGCAGAGAGTGAGAGAAACAGGCGTTGTATAATTGAGAATGGAGCAGCTGCTGCATTAGCCTTTGCGTTTGATGCATTTGCAAATGATTCCATTGAGAGGAATGTGAGTATCCTGCATCAGATTCTGTCTGCTCTAAATTCCATGTCTCCATTTCCATTGGAAGCCCTCGAATATTTGGGGTCTTGGGCTTCTTTACGTTGCATGGTTTGGTTTATGAAGAACCAAGATCTCTCGGGGAAAGAGAAGTCCATCGTGGCCCTGAAAGAGCTTCTTTCTTTTGGTGATTACTACCATGTGGAGATGCTAGCAGAAATTGAAGGAGTCAATCAACTATTGGTGGAATTACTTAACCAAAGAATTTTTAGTCCAACCATTTCAAAAGCTTCTTTGGCAGTAGTTTGGTATTTGGTTTCATCTTCTTCTCCTTGTAGTGAGAAGATGAAATTGAGATTTATTGAATTGGGTTTGGTTTCTTCAATGCTTGACATTCTCATTGGCTCAGAAAGGAGCCTATGTGAGAAGGCTCTGGCTATTTTTGACTCCCTCTGCAGTTGTGAGGAAGGAAGAGGAAAAGCTCACAGTAATGCTCTAACAATTCCTCTCCTGGTCAAGAAATTGTTGCGAGTTTCAACATTGGGCACGGATTACTCTGTTTCTGCTTTGTGGAAGCTATGCAAATTTGGAGAGAGGGATGAAGAAATGGTTCTGGTTGAGGCCCTTCAAGTTGGTGCCTTTCAGAAACTCTTGTTGGTGTTGCAGGTTGGTTGTGGTGATAAGACAAAGGAGAAAGCCACTGAGCTTCTCAAATTGCTCGATCCTTACAGGGCTGGCGTGGAATGCATTGACTCAGATTTTAAGAACCTCAAGAGATCAGTTTAA	1317	0.4343	MVFLGWRRRKKSRKAKLQELVTPNQFQCPISLELMKDPVTLSTGITYDRESIERWFDEGNYTCPVTNQIVSNFDLIPNHALRIIIQDWCVQNRQHGVERIPTPRIPISQMEVAEVVLRVKASASASARRLDQLGCLELVQKIERWGAESERNRRCIIENGAAAALAFAFDAFANDSIERNVSILHQILSALNSMSPFPLEALEYLGSWASLRCMVWFMKNQDLSGKEKSIVALKELLSFGDYYHVEMLAEIEGVNQLLVELLNQRIFSPTISKASLAVVWYLVSSSSPCSEKMKLRFIELGLVSSMLDILIGSERSLCEKALAIFDSLCSCEEGRGKAHSNALTIPLLVKKLLRVSTLGTDYSVSALWKLCKFGERDEEMVLVEALQVGAFQKLLLVLQVGCGDKTKEKATELLKLLDPYRAGVECIDSDFKNLKRSV*	439

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops2g00027	438	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	6	100	IPR013083	-
	Rops2g00027	438	SUPERFAMILY	ARM repeat	148	404	IPR016024	-
	Rops2g00027	438	PANTHER	WDSAM1 PROTEIN	19	418	IPR045185	GO:0061630
	Rops2g00027	438	SUPERFAMILY	RING/U-box	15	98	-	-
	Rops2g00027	438	ProSiteProfiles	U-box domain profile.	21	95	IPR003613	GO:0004842\|GO:0016567
	Rops2g00027	438	FunFam	RING-type E3 ubiquitin transferase	22	93	-	-
	Rops2g00027	438	Gene3D	-	126	427	IPR011989	-
	Rops2g00027	438	CDD	RING-Ubox_PUB	23	75	IPR045210	-
	Rops2g00027	438	Pfam	U-box domain	23	93	IPR003613	GO:0004842\|GO:0016567
	Rops2g00027	438	SMART	Ubox_2	25	88	IPR003613	GO:0004842\|GO:0016567

Showing 1 to 10 of 10 entries

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops2g00027	Rops-Chr2	624456	626086	Dispersed/Wgd

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops2g00027	1	436	U-box Gene Family	AT5G37490	41.425	1.75e-108	325

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops2g00027	-		-	gmx:100817623	635.18

Showing 1 to 1 of 1 entries