Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00027 ATGGTTTTTTTAGGATGGAGAAGAAGGAAGAAGAGCCGCAAAGCCAAGTTGCAAGAGCTGGTGACTCCTAACCAGTTCCAGTGCCCAATTTCTCTCGAGTTGATGAAGGATCCCGTCACATTATCTACTGGGATTACATATGATCGAGAAAGCATAGAAAGATGGTTTGATGAAGGGAATTACACGTGCCCCGTCACCAATCAGATTGTCAGCAACTTTGATCTCATTCCTAACCATGCACTTAGGATAATTATCCAAGATTGGTGTGTGCAAAATCGGCAACATGGGGTTGAAAGAATCCCAACCCCAAGAATACCCATTAGCCAAATGGAGGTAGCAGAGGTTGTTCTTCGTGTGAAGGCCTCAGCCTCAGCTTCAGCTAGACGTCTGGATCAACTAGGGTGCCTAGAATTGGTGCAGAAAATTGAGAGGTGGGGTGCAGAGAGTGAGAGAAACAGGCGTTGTATAATTGAGAATGGAGCAGCTGCTGCATTAGCCTTTGCGTTTGATGCATTTGCAAATGATTCCATTGAGAGGAATGTGAGTATCCTGCATCAGATTCTGTCTGCTCTAAATTCCATGTCTCCATTTCCATTGGAAGCCCTCGAATATTTGGGGTCTTGGGCTTCTTTACGTTGCATGGTTTGGTTTATGAAGAACCAAGATCTCTCGGGGAAAGAGAAGTCCATCGTGGCCCTGAAAGAGCTTCTTTCTTTTGGTGATTACTACCATGTGGAGATGCTAGCAGAAATTGAAGGAGTCAATCAACTATTGGTGGAATTACTTAACCAAAGAATTTTTAGTCCAACCATTTCAAAAGCTTCTTTGGCAGTAGTTTGGTATTTGGTTTCATCTTCTTCTCCTTGTAGTGAGAAGATGAAATTGAGATTTATTGAATTGGGTTTGGTTTCTTCAATGCTTGACATTCTCATTGGCTCAGAAAGGAGCCTATGTGAGAAGGCTCTGGCTATTTTTGACTCCCTCTGCAGTTGTGAGGAAGGAAGAGGAAAAGCTCACAGTAATGCTCTAACAATTCCTCTCCTGGTCAAGAAATTGTTGCGAGTTTCAACATTGGGCACGGATTACTCTGTTTCTGCTTTGTGGAAGCTATGCAAATTTGGAGAGAGGGATGAAGAAATGGTTCTGGTTGAGGCCCTTCAAGTTGGTGCCTTTCAGAAACTCTTGTTGGTGTTGCAGGTTGGTTGTGGTGATAAGACAAAGGAGAAAGCCACTGAGCTTCTCAAATTGCTCGATCCTTACAGGGCTGGCGTGGAATGCATTGACTCAGATTTTAAGAACCTCAAGAGATCAGTTTAA 1317 0.4343 MVFLGWRRRKKSRKAKLQELVTPNQFQCPISLELMKDPVTLSTGITYDRESIERWFDEGNYTCPVTNQIVSNFDLIPNHALRIIIQDWCVQNRQHGVERIPTPRIPISQMEVAEVVLRVKASASASARRLDQLGCLELVQKIERWGAESERNRRCIIENGAAAALAFAFDAFANDSIERNVSILHQILSALNSMSPFPLEALEYLGSWASLRCMVWFMKNQDLSGKEKSIVALKELLSFGDYYHVEMLAEIEGVNQLLVELLNQRIFSPTISKASLAVVWYLVSSSSPCSEKMKLRFIELGLVSSMLDILIGSERSLCEKALAIFDSLCSCEEGRGKAHSNALTIPLLVKKLLRVSTLGTDYSVSALWKLCKFGERDEEMVLVEALQVGAFQKLLLVLQVGCGDKTKEKATELLKLLDPYRAGVECIDSDFKNLKRSV* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00027 438 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 100 IPR013083 -
Rops2g00027 438 SUPERFAMILY ARM repeat 148 404 IPR016024 -
Rops2g00027 438 PANTHER WDSAM1 PROTEIN 19 418 IPR045185 GO:0061630
Rops2g00027 438 SUPERFAMILY RING/U-box 15 98 - -
Rops2g00027 438 ProSiteProfiles U-box domain profile. 21 95 IPR003613 GO:0004842|GO:0016567
Rops2g00027 438 FunFam RING-type E3 ubiquitin transferase 22 93 - -
Rops2g00027 438 Gene3D - 126 427 IPR011989 -
Rops2g00027 438 CDD RING-Ubox_PUB 23 75 IPR045210 -
Rops2g00027 438 Pfam U-box domain 23 93 IPR003613 GO:0004842|GO:0016567
Rops2g00027 438 SMART Ubox_2 25 88 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00027 Rops-Chr2 624456 626086 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00027 1 436 U-box Gene Family AT5G37490 41.425 1.75e-108 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00027 - - gmx:100817623 635.18