Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00019 ATGGAAGGAGGATCAGAGAAGTTGAATTGCTTATATAGAGAGTGCCTGAGAAATCATGCAGCCAGCCTGGGCAGCTACGCCACCGACGGGTGCGGCGAGTTCACGGTGTCACCGGGAGGGCTACAATGCGCGGCGTGTGGGTGCCACCGCAACTTCCACAGGAAAGTGGACATGGAGTACGGTGGAGGTGCAATGGTTGAGGCAGAGAGGAGCGGGAAGAAGAAGAGGTTCAGGTCAAAGTTCACGGCAGAACAAAGGGAGAAGATGATGGGTTTTGCAGAGAAGCTAGGGTGGAAGCTGCAAAGGAAGGAGCTTGATGATGAGATAGAGAGGTTCTGCAGAGGTATTGGGGTGACCAGGCAAGTGTTCAAAGTATGGATGCATAACCATAAGAACTCTTCCTCCTCATCTTCCACTCCAAACCTCTCCTCTCTCACCCAGTAG 444 0.527 MEGGSEKLNCLYRECLRNHAASLGSYATDGCGEFTVSPGGLQCAACGCHRNFHRKVDMEYGGGAMVEAERSGKKKRFRSKFTAEQREKMMGFAEKLGWKLQRKELDDEIERFCRGIGVTRQVFKVWMHNHKNSSSSSSTPNLSSLTQ* 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00019 147 Pfam ZF-HD protein dimerisation region 10 56 IPR006456 -
Rops2g00019 147 Gene3D - 63 138 - -
Rops2g00019 147 FunFam Zinc-finger homeodomain protein 2 63 136 - -
Rops2g00019 147 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 12 56 IPR006456 -
Rops2g00019 147 NCBIfam homeobox domain, ZF-HD class 74 132 IPR006455 -
Rops2g00019 147 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 12 55 IPR006456 -
Rops2g00019 147 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 9 133 - -
Rops2g00019 147 SUPERFAMILY Homeodomain-like 69 132 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00019 Rops-Chr2 532690 533222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00019 12 133 ZF-HD Transcription Factor Family AT4G24660 42.262 3.92e-38 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Rops2g00019 ZF-HD_dimer 6e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00019 - - pvu:PHAVU_002G332400g 214.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00019 2 532690 533222 Rops5g00421 5 7223563 7224069 PCT