Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00016 ATGGATGGAGATAACAGTCTCAACATACGCAATTGGGGTTACTATGAGCCCACAACGTCCTTCAAGAGCCATCTTGGACTACAGCTAATGTCTTCCATGTCCGAAAAACCTTTGCTTGGAGGACGCAATGCTGCAGTTTTATCTGGAACAACCAGTGCCCCATTTCACCACAGGGACATTGGAATGCCCCAACCGTACCCGATGGATGATTACATGAGGGATGCTTGGATTAATCATAGAGACAAGTTTATGAATATGAATATGAATATGATACCGACAAACCCCAATTACACCGTTATTCCAGAGACATCTTCTGCACATCAAATGCGAATGATTCAATCACCTGAATTGCCCAAGGAAGAAGCACCAATGGAAGAGCCACCTGTTGAGAAGGTCAATGGAACTAGTAAGAAAAGGAGGCAGGGGCCTAAGGTGCCCAAGGTTCCCAAGTCACCCAAGGTGAAGAAGCCCAAGAGAGGGCCTCGTGTGCCAAAGGATGAGAACACTCCTTCAGTCCAACGTGCGAGGACTGCAAAGAAAACTACTGAAATTGTAATTAACGGGATTGACATGGATATTTCCAGTATTCCTATACCAGTCTGTTCATGCACTGGGGCACCTCAACAGTGCTATAGATGGGGCTCTGGGGGGTGGCAATCTGCATGTTGCACAACAGGTATGTCAGTGTATCCTTTGCCTATGAGTACCAAGCGCCGTGGTGCAAGGATAGCTGGAAGAAAAATGAGTATAGGAGCATTTAAGAAAGTTTTAGAGAAACTTGCAGCGGAGGGTTATAACTTTTCTAATCCGATCGATTTGAGGACTTATTGGGCAAAACATGGCACCAACAAGTTTGTCACTATCAGTTGCATCTCGGTGATTGGGGTTACCTTCATACCAGTTCCTGTGCTCTCTCCTCCTTCTCCATCCAATAACTCTAACGATAAAAGGTCTGGGACTTGA 963 0.4559 MDGDNSLNIRNWGYYEPTTSFKSHLGLQLMSSMSEKPLLGGRNAAVLSGTTSAPFHHRDIGMPQPYPMDDYMRDAWINHRDKFMNMNMNMIPTNPNYTVIPETSSAHQMRMIQSPELPKEEAPMEEPPVEKVNGTSKKRRQGPKVPKVPKSPKVKKPKRGPRVPKDENTPSVQRARTAKKTTEIVINGIDMDISSIPIPVCSCTGAPQQCYRWGSGGWQSACCTTGMSVYPLPMSTKRRGARIAGRKMSIGAFKKVLEKLAAEGYNFSNPIDLRTYWAKHGTNKFVTISCISVIGVTFIPVPVLSPPSPSNNSNDKRSGT* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00016 320 Pfam GAGA binding protein-like family 1 288 IPR010409 -
Rops2g00016 320 PANTHER - 1 288 IPR010409 -
Rops2g00016 320 SMART GAGA_bind_2 1 289 IPR010409 -
Rops2g00016 320 MobiDBLite consensus disorder prediction 117 179 - -
Rops2g00016 320 MobiDBLite consensus disorder prediction 119 137 - -
Rops2g00016 320 MobiDBLite consensus disorder prediction 138 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00016 Rops-Chr2 485556 491655 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00016 1 288 BBR or BPC Transcription factor family AT2G01930 51.171 2.27e-93 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Rops2g00016 GAGA_bind 5e-107 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00016 - - gmx:606296 462.225