Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00015 ATGTTAGCCAATAACTTGTCTCCCTCGTCAGTTCCCACTTCTGAGCCCTTCTCCTGCGCTGAGAATGGTAGCGCTACTAATAAAAGGAGGAGAAGGCCTGCGGGAACACCAGATCCAGATGCAGAAGTGGTGTCCCTCTCACCCAAAACCTTGCTGGAATCAGATCGTTATGTCTGTGAGATCTGCAACCAGGGATTCCAGAGGGACCAGAACCTTCAGATGCACCGGCGGCGGCACAAGGTGCCGTGGAAGCTATTGAAGAGGGAGACACCGGTGGTGAGAAAGAGAGTGTTTGTTTGTCCGGAGCCTACGTGTCTGCACCATGACCCATGCCACGCCCTTGGTGACCTTGTTGGGATAAAGAAGCACTTCAGGAGGAAACACAGCAATCACAAGCAATGGGTCTGTGAGAGATGCTCCAAAGCCTATGCGGTGCAGTCTGATTACAAAGCACATCTCAAAACCTGTGGCACCAGAGGCCATTCTTGCGATTGCGGCCGCGTTTTCTCAAGGGTGGAGAGCTTTATCGAGCACCAAGACGCGTGCAACATGAAGCGATTAAGGCCAGAATCGCAGCAGCCACTACAAGCATGCTTGTCTCGTACAGGTTCAAGCCCCAGCCCTTCAATCGAAACCGGTCTAGCAATACCAAAGCCCGTGAAAGAAGCCTCATTCACGAACCCTACTGAAACCACATCACTCCACCCCAACTTGGAACTTCAGCTCTCCACCACAACAACCACTGTATCCAATTCCATTCCCATTCCCATTACACCTGAGACTAAGAGAGACGGAAACAGTTCATCAGAACCCAAGGAGAGCTTGCAGCTGTCAATCGGCTCATCGGAGAGTGGTGAGGGAGTATGTGCAGGTGTGATTCAAGAGCAAGCACGTGAGCAGTTGAGGATAGCAATGGCGGAGAAGGCGTATGCGGAGGAGGCAAGGAAGGAAGCCAAAAGACAAATTGAACTGGCAGAGCTTGAGTTCACGAATGCCAAGAGGATCAGACGACAAGCTCAAGCGGAACTGGACAAAGCGTATGCGTTGAAAGAGCATGCCATCAAACAGATCCATTCAACAATGCTTCAAATCACCTGCCATGCTTGCAAGCAGCAACACTTTCAATCACCAACCACGACGCCTGCACCTGCAGCCCACAACTCTTTCGTCTTCAGCTACATGTCGTCTGCAATAACAACACAACTTGGCCAAGTAGAGAAAGCATCATGCCACAACCGCTAA 1242 0.5105 MLANNLSPSSVPTSEPFSCAENGSATNKRRRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKAYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMKRLRPESQQPLQACLSRTGSSPSPSIETGLAIPKPVKEASFTNPTETTSLHPNLELQLSTTTTTVSNSIPIPITPETKRDGNSSSEPKESLQLSIGSSESGEGVCAGVIQEQAREQLRIAMAEKAYAEEARKEAKRQIELAELEFTNAKRIRRQAQAELDKAYALKEHAIKQIHSTMLQITCHACKQQHFQSPTTTPAPAAHNSFVFSYMSSAITTQLGQVEKASCHNR* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00015 413 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 369 IPR031140 -
Rops2g00015 413 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Rops2g00015 413 MobiDBLite consensus disorder prediction 1 44 - -
Rops2g00015 413 MobiDBLite consensus disorder prediction 1 24 - -
Rops2g00015 413 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Rops2g00015 413 MobiDBLite consensus disorder prediction 243 283 - -
Rops2g00015 413 Coils Coil 301 356 - -
Rops2g00015 413 SUPERFAMILY beta-beta-alpha zinc fingers 56 154 IPR036236 -
Rops2g00015 413 FunFam protein indeterminate-domain 12-like 36 104 - -
Rops2g00015 413 Gene3D Classic Zinc Finger 35 97 - -
Rops2g00015 413 Gene3D Classic Zinc Finger 119 196 - -
Rops2g00015 413 SMART c2h2final6 98 128 IPR013087 -
Rops2g00015 413 SMART c2h2final6 134 161 IPR013087 -
Rops2g00015 413 SMART c2h2final6 57 79 IPR013087 -
Rops2g00015 413 MobiDBLite consensus disorder prediction 243 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00015 Rops-Chr2 456408 459392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00015 21 408 C2H2 Transcription Factor Family AT2G01940 56.132 2.72e-145 419
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops2g00015 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00015 K25871 - gmx:100800187 579.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops2g00015 2 456408 459392 Rops2g00015 2 456408 459392 ECH
Rops2g00015 2 456408 459392 Rops5g00423 5 7277217 7280305 PCT