Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops2g00015 | ATGTTAGCCAATAACTTGTCTCCCTCGTCAGTTCCCACTTCTGAGCCCTTCTCCTGCGCTGAGAATGGTAGCGCTACTAATAAAAGGAGGAGAAGGCCTGCGGGAACACCAGATCCAGATGCAGAAGTGGTGTCCCTCTCACCCAAAACCTTGCTGGAATCAGATCGTTATGTCTGTGAGATCTGCAACCAGGGATTCCAGAGGGACCAGAACCTTCAGATGCACCGGCGGCGGCACAAGGTGCCGTGGAAGCTATTGAAGAGGGAGACACCGGTGGTGAGAAAGAGAGTGTTTGTTTGTCCGGAGCCTACGTGTCTGCACCATGACCCATGCCACGCCCTTGGTGACCTTGTTGGGATAAAGAAGCACTTCAGGAGGAAACACAGCAATCACAAGCAATGGGTCTGTGAGAGATGCTCCAAAGCCTATGCGGTGCAGTCTGATTACAAAGCACATCTCAAAACCTGTGGCACCAGAGGCCATTCTTGCGATTGCGGCCGCGTTTTCTCAAGGGTGGAGAGCTTTATCGAGCACCAAGACGCGTGCAACATGAAGCGATTAAGGCCAGAATCGCAGCAGCCACTACAAGCATGCTTGTCTCGTACAGGTTCAAGCCCCAGCCCTTCAATCGAAACCGGTCTAGCAATACCAAAGCCCGTGAAAGAAGCCTCATTCACGAACCCTACTGAAACCACATCACTCCACCCCAACTTGGAACTTCAGCTCTCCACCACAACAACCACTGTATCCAATTCCATTCCCATTCCCATTACACCTGAGACTAAGAGAGACGGAAACAGTTCATCAGAACCCAAGGAGAGCTTGCAGCTGTCAATCGGCTCATCGGAGAGTGGTGAGGGAGTATGTGCAGGTGTGATTCAAGAGCAAGCACGTGAGCAGTTGAGGATAGCAATGGCGGAGAAGGCGTATGCGGAGGAGGCAAGGAAGGAAGCCAAAAGACAAATTGAACTGGCAGAGCTTGAGTTCACGAATGCCAAGAGGATCAGACGACAAGCTCAAGCGGAACTGGACAAAGCGTATGCGTTGAAAGAGCATGCCATCAAACAGATCCATTCAACAATGCTTCAAATCACCTGCCATGCTTGCAAGCAGCAACACTTTCAATCACCAACCACGACGCCTGCACCTGCAGCCCACAACTCTTTCGTCTTCAGCTACATGTCGTCTGCAATAACAACACAACTTGGCCAAGTAGAGAAAGCATCATGCCACAACCGCTAA | 1242 | 0.5105 | MLANNLSPSSVPTSEPFSCAENGSATNKRRRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKAYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMKRLRPESQQPLQACLSRTGSSPSPSIETGLAIPKPVKEASFTNPTETTSLHPNLELQLSTTTTTVSNSIPIPITPETKRDGNSSSEPKESLQLSIGSSESGEGVCAGVIQEQAREQLRIAMAEKAYAEEARKEAKRQIELAELEFTNAKRIRRQAQAELDKAYALKEHAIKQIHSTMLQITCHACKQQHFQSPTTTPAPAAHNSFVFSYMSSAITTQLGQVEKASCHNR* | 414 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops2g00015 | 413 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 18 | 369 | IPR031140 | - | |
Rops2g00015 | 413 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 59 | 79 | IPR013087 | - | |
Rops2g00015 | 413 | MobiDBLite | consensus disorder prediction | 1 | 44 | - | - | |
Rops2g00015 | 413 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Rops2g00015 | 413 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 57 | 79 | IPR013087 | - | |
Rops2g00015 | 413 | MobiDBLite | consensus disorder prediction | 243 | 283 | - | - | |
Rops2g00015 | 413 | Coils | Coil | 301 | 356 | - | - | |
Rops2g00015 | 413 | SUPERFAMILY | beta-beta-alpha zinc fingers | 56 | 154 | IPR036236 | - | |
Rops2g00015 | 413 | FunFam | protein indeterminate-domain 12-like | 36 | 104 | - | - | |
Rops2g00015 | 413 | Gene3D | Classic Zinc Finger | 35 | 97 | - | - | |
Rops2g00015 | 413 | Gene3D | Classic Zinc Finger | 119 | 196 | - | - | |
Rops2g00015 | 413 | SMART | c2h2final6 | 98 | 128 | IPR013087 | - | |
Rops2g00015 | 413 | SMART | c2h2final6 | 134 | 161 | IPR013087 | - | |
Rops2g00015 | 413 | SMART | c2h2final6 | 57 | 79 | IPR013087 | - | |
Rops2g00015 | 413 | MobiDBLite | consensus disorder prediction | 243 | 284 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops2g00015 | Rops-Chr2 | 456408 | 459392 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Rops2g00015 | 21 | 408 | C2H2 Transcription Factor Family | AT2G01940 | 56.132 | 2.72e-145 | 419 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Rops2g00015 | None | None | None |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops2g00015 | K25871 | - | gmx:100800187 | 579.711 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Rops2g00015 | 2 | 456408 | 459392 | Rops2g00015 | 2 | 456408 | 459392 | ECH | |
Rops2g00015 | 2 | 456408 | 459392 | Rops5g00423 | 5 | 7277217 | 7280305 | PCT |