Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00002 ATGCTCTTCCTTCGCCGTGAGCTTGTGTGCACCGAAGATTTTGCAAACATGAACGGGAAGGCCTTCATCTCTAAGGAACTCAATGCCAAGCACACCAAGATCTTAGAGGAACTTCTTAGGCTGCCTGAAAACAAGGAATATGCAGATTGTCAGAACAAGGCACCGCGATGGGCAAGTGTGAACCTAGGAATTTTCATTTGCATGCAATGCTTAGGAATTCACCGAAGTCTTGGAGTGCATATATCTAAGGTGCGGTCCACAACTTTGGATACATGGCTGCCAGATCAGGGTTCTTTGGACATGCAAAAGAAGAGTTCACCTCCATTAAAGAGGCCATCCTCATCAGTTGATTTTGATAAACCCACATGA 369 0.4526 MLFLRRELVCTEDFANMNGKAFISKELNAKHTKILEELLRLPENKEYADCQNKAPRWASVNLGIFICMQCLGIHRSLGVHISKVRSTTLDTWLPDQGSLDMQKKSSPPLKRPSSSVDFDKPT* 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00002 122 CDD ArfGap 35 96 - -
Rops2g00002 122 PRINTS HIV Rev interacting protein signature 44 63 IPR001164 GO:0005096
Rops2g00002 122 PRINTS HIV Rev interacting protein signature 63 80 IPR001164 GO:0005096
Rops2g00002 122 PRINTS HIV Rev interacting protein signature 84 105 IPR001164 GO:0005096
Rops2g00002 122 MobiDBLite consensus disorder prediction 94 112 - -
Rops2g00002 122 FunFam stromal membrane-associated protein 1 isoform X1 17 106 - -
Rops2g00002 122 ProSiteProfiles ARF GTPase-activating proteins domain profile. 32 96 IPR001164 GO:0005096
Rops2g00002 122 MobiDBLite consensus disorder prediction 94 122 - -
Rops2g00002 122 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 17 96 IPR044520 GO:0005096
Rops2g00002 122 SMART arf_gap_3 33 113 IPR001164 GO:0005096
Rops2g00002 122 SUPERFAMILY ArfGap/RecO-like zinc finger 31 96 IPR037278 -
Rops2g00002 122 Gene3D Arf GTPase activating protein 17 104 IPR038508 -
Rops2g00002 122 Pfam Putative GTPase activating protein for Arf 33 96 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00002 Rops-Chr2 32244 36107 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00002 35 101 C2H2 Transcription Factor Family AT3G07940 58.209 9.95e-22 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00002 K12486 - gmx:100803735 151.754