Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops2g00001 ATGTCTTCTGCCGCCGCGGGCGTTACCTCCGACGTTCCTCAACAATATTTCTGCTACCAGTGCAACCGCACCGTTTCCATAACTCCTTCCTCTGATCTGGTGTGCCCCAATTGCAACGGTGGCTTCATCGAGGAAGTGGAAAATCCAATTCCAAACACTTCTCATCCGTTCTCTTTCACCTACGAGTTTGGCGGCGAAGATCTACCCACCCTGTTTGGCGGTCGATCTTCCCCTTTCGGAGACGCTGACGCTTTCAACCCTTTGGTGTTCCTTCAGAATTACATTCAAACCCTGAGAGCCGGTGGCGCTAATGTTCAGTTCGTGATCGACAACTCGGGGGATCCCAGTGGAGCATTTCGTCTCCCCACAAATCTCAACCTTGGCGATTACTTCTTCGGGCCCGGTCTCGAGCAATTGATTCAGCACCTTGCGGAGAACGATCCCAACCGGTATGGGACGCCCCCAGCTTCCAACTCTGCCATCGAGGGGCTTCCCAACATCTCGATCACGGAGGAATTGTTGGCCTCGGATTCGTCACAGTGTGCGGTGTGTAAAGACACCTTCGAGCTCCGGGAATTGGCCAAGCAGATGCCCTGTAAACACATTTATCATTCCGATTGCATCCTACCCTGGTTGAAATTGCACAATTCTTGTCCTGTGTGTCGGTATGAGTTACCAACTGATGATTCTGACTACGAGCAAAGGGCTCGAGGGAATCGGAGTCAATCTGTAGGTGCAGGGGCTGCTGATTCTTCTGGAGATACAGATACCTTGCAGTCACCCAGGGAGCGCAGATTTAGGGTTTCTTTGCCGTGGCCCTTTAGGCAGTTTTCTTCCATTGCTGAGACCAGCGATGTTGGGAATGCCAATAACAGTGGAAACAATAATGGGGAATCAAACCATAATTTCGAGTCAGAAACCAGGCAAGAAGATCTTGATTGA 942 0.5096 MSSAAAGVTSDVPQQYFCYQCNRTVSITPSSDLVCPNCNGGFIEEVENPIPNTSHPFSFTYEFGGEDLPTLFGGRSSPFGDADAFNPLVFLQNYIQTLRAGGANVQFVIDNSGDPSGAFRLPTNLNLGDYFFGPGLEQLIQHLAENDPNRYGTPPASNSAIEGLPNISITEELLASDSSQCAVCKDTFELRELAKQMPCKHIYHSDCILPWLKLHNSCPVCRYELPTDDSDYEQRARGNRSQSVGAGAADSSGDTDTLQSPRERRFRVSLPWPFRQFSSIAETSDVGNANNSGNNNGESNHNFESETRQEDLD* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops2g00001 313 FunFam E3 ubiquitin-protein ligase RING1-like 142 228 - -
Rops2g00001 313 SUPERFAMILY RING/U-box 161 228 - -
Rops2g00001 313 SMART ring_2 181 221 IPR001841 -
Rops2g00001 313 MobiDBLite consensus disorder prediction 281 302 - -
Rops2g00001 313 MobiDBLite consensus disorder prediction 237 256 - -
Rops2g00001 313 CDD RING-H2_RNF126-like 180 222 - -
Rops2g00001 313 ProSiteProfiles Zinc finger RING-type profile. 181 222 IPR001841 -
Rops2g00001 313 Pfam zinc-ribbon 14 45 IPR039525 GO:0061630
Rops2g00001 313 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 142 228 IPR013083 -
Rops2g00001 313 MobiDBLite consensus disorder prediction 231 269 - -
Rops2g00001 313 MobiDBLite consensus disorder prediction 281 313 - -
Rops2g00001 313 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 79 226 - -
Rops2g00001 313 Pfam Ring finger domain 180 222 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops2g00001 Rops-Chr2 18246 26547 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops2g00001 122 237 C3H Transcription Factor Family AT5G01980 50.000 4.55e-35 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops2g00001 K11982 - gmx:100818686 391.734