Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02495 ATGCTCCGAGTCTCAACGGTAGAGAGAGCCATGGTTGAGGCTGTAGTTCAAAGAGACAGGCCTTCTTCAAAGGGCAAGAGAAAGGTCTTTAGAAAAAAGACGCTGGAAGCTGATCCTCAAAAGCAAGGTATCAGTCGTAATCCACAAAAAAGGCGAAAGGGAGGGGGCAGTGGTGGTGAATGTATTACTTCTGATGCTGAAGCTCAGTTTAATGCTATCGAACGTGCAAAAGAGGTTCAAGCTAACCTGTCTCCTGAATTCCCAAGCCTTCTCAGGTGCATGCTTCCATCTCATGTAACTGGAGGATTTTGGCTGGGTCTTCCTAAAAAATTCTGCCAGTTGCATTTGCCTAAGGTTGATACCATTATTGCTTTGGAAGATGAAAGTGGGGAACCTTATGAAACCAAATATCTTGCTGGAAAGGTGGGCTTAAGCGGTGGATGGAGGGGGTTTTCCTTAGCTCATAACTTACTTGAGAAGGATGTTCTAATATTCCACTTGGTCCAACCTTCCAAGTTTAAGGTGTACATTATAAGATCTCAGGGGTCAGATGAAGTGGATGGTGCTCTTGGCCTTCTCAAGTTAGATGACTGCAGAAAACAAAAGGATGAAGAGGGTGGTGCTCTTGACGTTACTCAAGGAAATGATCCAAAGAATGGCGGGATGATTTTTGATGCTAACGTATCTCAATCAGATCAGCTTGAAAATACAAGTAAAGCTCTTTGCCCTGAAGTTTGGGATGGGATTAAGTTTGCAGAATCTGTTATCAGTTTCGAACAAGTGAATGGTATTGAGAATTTCAGCATTCTGGCCAATGATTTGGTTATTGATTCAGAGCTCTCTAAATACCTTCGGGCCAAGTATTACAAGCTGTGTTGCAGCCAGAGAATGTTTCTTCATGACCATCTTCTTGGGGGTCTTAACTCTAAACTGGTGGCTGGAATAATTTCTGAAACCATTAATATTGCCGATGCCATTAAAGCCAGCAATCTTACAACCTCTCCAGATAGTTTTGTCATATGGGACAGAACTTTGAAAGCCTTTGAGGCAATGGGAATGAAGGTCAGCTTCTTGCTTGTTCGGCTAGACCAGCTCATGAAACTAGCCTTGAAATTTAAGAGGTACGAAGAGGCAATGCTTGAACGAGACCATGCTGAAGAGGACTTGAAAGCTCTGGAAGCAAAACTTTTGGAAGTGAAACAGACCATAAAAAGACTTGATGAAGAGATTGCCTCACAAGATATGAACCCTCAGAGGCTGGAGACTATGTTTCAAGAACTGGCTAATGCTCCTTGGTGA 1299 0.4296 MLRVSTVERAMVEAVVQRDRPSSKGKRKVFRKKTLEADPQKQGISRNPQKRRKGGGSGGECITSDAEAQFNAIERAKEVQANLSPEFPSLLRCMLPSHVTGGFWLGLPKKFCQLHLPKVDTIIALEDESGEPYETKYLAGKVGLSGGWRGFSLAHNLLEKDVLIFHLVQPSKFKVYIIRSQGSDEVDGALGLLKLDDCRKQKDEEGGALDVTQGNDPKNGGMIFDANVSQSDQLENTSKALCPEVWDGIKFAESVISFEQVNGIENFSILANDLVIDSELSKYLRAKYYKLCCSQRMFLHDHLLGGLNSKLVAGIISETINIADAIKASNLTTSPDSFVIWDRTLKAFEAMGMKVSFLLVRLDQLMKLALKFKRYEEAMLERDHAEEDLKALEAKLLEVKQTIKRLDEEIASQDMNPQRLETMFQELANAPW* 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02495 432 Coils Coil 375 416 - -
Rops1g02495 432 Gene3D - 67 182 IPR015300 -
Rops1g02495 432 MobiDBLite consensus disorder prediction 16 61 - -
Rops1g02495 432 Pfam B3 DNA binding domain 93 180 IPR003340 GO:0003677
Rops1g02495 432 SUPERFAMILY DNA-binding pseudobarrel domain 83 180 IPR015300 -
Rops1g02495 432 SMART B3_2 90 181 IPR003340 GO:0003677
Rops1g02495 432 CDD B3_DNA 88 179 IPR003340 GO:0003677
Rops1g02495 432 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 10 181 IPR044837 -
Rops1g02495 432 ProSiteProfiles B3 DNA-binding domain profile. 90 181 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02495 Rops-Chr1 48141255 48143249 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02495 62 179 B3 DNA Binding Superfamily AT3G19184 50.847 2.61e-38 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Rops1g02495 B3 3.3e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02495 - - ccaj:109816480 543.502