Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02494 ATGAGAATGGAGGAAGAGGAAGATGAAGTGGTGTCGTGTTCTTCTGATTCCGGTGACGATGATCTTGAAGTTGAACAACGGAAATCGCAGAACGTGGAAGCTCTCCTCAGGGGGAACCTGATTGTGAAGAGACAATCGTTGCTACCGCGAGTTCTGTCAGTAATTACGAAGGGAGCGACAGTTTGCAGAAAACCCTTTAGGCCCCCATCCTCTAAATTATCTGATGCTTACAATCAAGACCTTACTCGTAGGCTTTCTGCTCGCAAAAGGTTTGTCCCTTGGGGCTCTTCCTCTCCTTCTAGTCCTAGACCCCTGTCACAGTTGAATTTGAACGTTGTTGATGTTGATGTTGATGTTGACGCTGCTGAGGAGGTGAAACCGTCTTTGCCCCCTGGGATTGATCCTCTAGTACTGTGGCACCCTCAACACTCTGAGGATGACGCATCTAATTTCAATTTGACAACAATAGTTGTTGATCCATTGCTTGTTCGTTTCCTTCGTCCACATCAGAGAGAAGGGGTTCAGTTTATGTTTGATTGTGTCGCAGGACTATGTAGCACACCAAATATACAAGGATGCATTTTGGCAGATGACATGGGTTTGGGGAAGACATTGCAGTCGATCACGTTACTATATACTCTTATTTGCCAAGGATTCGACGGGAAGCCAATGGTTAGAAAGGTCATCATTGTGACTCCCACCAGCCTTGTCAGCAATTGGGAAGCTGAAATCAAGAAGTGGGTTGGAGAAAGAGTTCATCTTGTTGCTCTATGTGAAAGCACTAGAGAAGATGTTGTCTCTGGGATTGACAATTTTATAAGTCCCCAAAGCAATTTACAGGTGCTCATTGTTTCATATGAGACATTCCGAACGCATTCATCAAAGTTTAGCTCCAGTGGCTCATGTGACCTCCTCATCTGTGATGAGGCTCACAGACTGAAAAATGATCAGACAATTACAAACCGGGCATTGGATGCTCTCCCATGCAAACGAAGAATTTTGTTGTCAGGAACTCCTTTGCAAAATGACTTAGAAGAATTCTTCGCAATGGTGAACTTTACAAATCCTAGAATATTGGGTGATATTTCACATTTTCGACGTTACTATGAGGCACCGATTATTTGCGGAAGAGAACCTGCTGCCACTGCAGAAGAGAAGAAGCTAGGTGCTGAACGCTCTGCAGAATTAAGTGCCAAAGTTAATCAGTTCATATTAAGAAGGACTAACGCATTATTGTCGAATCACTTACCACCAAAGATAGTTGAAGTTGTTTGCTGCAAGTTGACTCCACTACAGTCAGACCTATATAAACATTTTATACAATCCAAAAATGTTAAACGTGCACTTACTAAAGAGCTGAAGCAATCAAAGATTTTGGCCTACATAACAGCTCTCAAAAAGTTATGCAATCATCCAAAGCTCATCTATGATACCGTACGAAGTGGGAGTCCAGGAACTTCAGGTTTTGAGGACTGTATTCGATTCTTCCCTCCGGAAATGTTATCTGGAAGGTCTGGGTCATGGACGGGAGGGCATGGAGCGTGGGTTGAGCTATCTGGGAAAATGCAAGTCTTAGCAAGATTACTTGCTCATTTACGTCAGAGAACAAATGATCGCATTGTCCTGGTCTCAAACTATACTCAGACTCTTGATCTTTTTGCTCAATTGTGTCGGGAACGAAGGTACCCTCACTTGAGGCTTGATGGCACTACATCAATCAGTAAAAGGCAGAAGTTGGTCAACTGCTTTAATGACCCAACTAAGGATGAATTTGTTTTTCTCTTAAGCAGCAAAGCTGGTGGTTGTGGACTCAATCTGATTGGTGGAAACCGACTTGTCTTGTTTGATCCTGATTGGAATCCTGCAAACGACAAACAAGCAGCAGCAAGAGTGTGGAGGGATGGACAGAAGAAGAGAGTTTACATTTATAGATTTTTGAGTGCCGGGACAATAGAAGAAAAGGTCTTCCAACGTCAGATGTCAAAAGAGGGGCTGCAGAAGGTCATTCAGCGGGAGCAAACTGATAACCTTGTAGCACAGGGTAACTTTCTTTCGACAGAGGATCTTCGCGATTTGTTTACCTTTCATGAGAATGTCAGATCAGAGATTCATGAAAACATGCGATGCAGTAGGTGTCAAACATATGATGGGCCTCAAAGCACTGACGTCCTATCAACAATGATTAATAGTGAATACGATGAAGAAACCTCTGATATAGGAGGCTTTGCAGAAATTGCAGGCTGCTTAGAGAATTTAAAAAGATCAGAAAAGCAGGTAGGGACCCCATTGGAAGAAAATTTAAGTAGTTGGGGCCATCATTTTTTCCCAACTTCTGTACCGGATGCTATCCTCCAGGCTTCAGCTGGTGATGAGGTGACTTTTGTCTTTACAAACCAAGTTAACGGAAAGCTGGTACCCATTGAGTCCATAATCAGTCCCAAGCTACAGCAAAGGGAATTACTCAAGAACGTCAAACAAAAATCCGCTCCTTTTGCTTTACATGATAAACTACCGCTGCGGTCTGCTTCGGTTGCTGTGAAGGAAGCACGAAATTCTGTCAGAATCACCAATATCACTATGAATGAAGCATTAAAGACCGATCACTCTCTTGTAAATGATGTATTACCACAGAAAAGATCATGTCCCGCTAATACCAATGTTGATGATTTTGAATAA 2676 0.4283 MRMEEEEDEVVSCSSDSGDDDLEVEQRKSQNVEALLRGNLIVKRQSLLPRVLSVITKGATVCRKPFRPPSSKLSDAYNQDLTRRLSARKRFVPWGSSSPSSPRPLSQLNLNVVDVDVDVDAAEEVKPSLPPGIDPLVLWHPQHSEDDASNFNLTTIVVDPLLVRFLRPHQREGVQFMFDCVAGLCSTPNIQGCILADDMGLGKTLQSITLLYTLICQGFDGKPMVRKVIIVTPTSLVSNWEAEIKKWVGERVHLVALCESTREDVVSGIDNFISPQSNLQVLIVSYETFRTHSSKFSSSGSCDLLICDEAHRLKNDQTITNRALDALPCKRRILLSGTPLQNDLEEFFAMVNFTNPRILGDISHFRRYYEAPIICGREPAATAEEKKLGAERSAELSAKVNQFILRRTNALLSNHLPPKIVEVVCCKLTPLQSDLYKHFIQSKNVKRALTKELKQSKILAYITALKKLCNHPKLIYDTVRSGSPGTSGFEDCIRFFPPEMLSGRSGSWTGGHGAWVELSGKMQVLARLLAHLRQRTNDRIVLVSNYTQTLDLFAQLCRERRYPHLRLDGTTSISKRQKLVNCFNDPTKDEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSAGTIEEKVFQRQMSKEGLQKVIQREQTDNLVAQGNFLSTEDLRDLFTFHENVRSEIHENMRCSRCQTYDGPQSTDVLSTMINSEYDEETSDIGGFAEIAGCLENLKRSEKQVGTPLEENLSSWGHHFFPTSVPDAILQASAGDEVTFVFTNQVNGKLVPIESIISPKLQQRELLKNVKQKSAPFALHDKLPLRSASVAVKEARNSVRITNITMNEALKTDHSLVNDVLPQKRSCPANTNVDDFE* 892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02494 891 SMART ultradead3 162 365 IPR014001 -
Rops1g02494 891 CDD DEXHc_RAD54 166 407 - -
Rops1g02494 891 PANTHER SNF2/RAD54 FAMILY MEMBER 57 802 - -
Rops1g02494 891 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 155 407 IPR027417 -
Rops1g02494 891 Gene3D - 138 406 IPR038718 -
Rops1g02494 891 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 524 685 IPR001650 -
Rops1g02494 891 MobiDBLite consensus disorder prediction 1 26 - -
Rops1g02494 891 CDD SF2_C_SNF 518 646 - -
Rops1g02494 891 Pfam Helicase conserved C-terminal domain 525 634 IPR001650 -
Rops1g02494 891 FunFam DNA repair and recombination protein RAD54 135 406 - -
Rops1g02494 891 FunFam Predicted protein 429 503 - -
Rops1g02494 891 Pfam SNF2-related domain 169 475 IPR000330 GO:0005524|GO:0140658
Rops1g02494 891 Gene3D - 429 698 - -
Rops1g02494 891 SMART helicmild6 551 635 IPR001650 -
Rops1g02494 891 Gene3D - 407 714 IPR027417 -
Rops1g02494 891 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 411 798 IPR027417 -
Rops1g02494 891 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 184 357 IPR014001 -
Rops1g02494 891 FunFam DNA repair and recombination protein RAD54-like 512 683 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02494 Rops-Chr1 48093511 48121439 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02494 192 656 RAD5 or RAD16-like Gene Family AT3G16600 25.141 1.15e-24 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Rops1g02494 SNF2_N 3.9e-54 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02494 K10875 - gmx:100781631 1474.53