Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops1g02493 ATGCCCCATGAGAGAAATCAGAAAACGCTTTCGAAGAACCGCAACTTGCACCTGACTCACCCTTTTGAACTCAGGTGGGACATCTTGATTCTCATGCAAGAGAAAAGGAGTGTTGGGTCCTTTCCTGCGATTGTTGGTATGATGCAGGGGCCTAGTTCTAGTGGCACTGATGTGGATCACGTCCAAAATGCGGTGGAGTTCCGGTTGTCTGATTATCTGGGGGCTTCTGATGAGATTGCAACTGCATGTTTGCGTGCTGATGTTGAGAGCTTCGGTGGCCGGAATGCTGGTGAACCTAGTTCAAGACTGAATCTGATCAACCAAGTCGATGATGATGGGCTGTCTTCGTCGTCCGATGCAGCCGTTGAGGATGATGGTCTGACGCCAGATGAAAAGCAATCTGAACCAAATAATGTTCCTTTTTCAGTTAGTTCAAATACTAATCTACATGGCGGTCAACCTGGAATTCAGCCTTTCATTTTGCAAGGTTCCAGATCTAATCATATAACCCAGAATGTTAGTCTAGATATGGAACACACTGCTAATCGTGGGAAGGGCAGGGGAGCTGGTAGTGCCGTTGATATTCCCAATACTAATACTAGAGGATTGGATAAAAAGCAGACATCATTTGATCAAATAGGGACTTCGTCTGGAAGCTCTGGTTGCATGATTTGGGGGGATGGTGCCAGTTCAAGCTCTTCTTTAGTAGATTGGGGTTCTTCCTGCAAGAGAAAGGCCCTTGAATGTACTTCTGGGAAACTGCATAATGCAGGAAGTCCAAGCTCTCTTGTAGAATCTGAAAATGGTTGCTGGCCTACTGATCCTGTTGATCTTAATGCTTCCAGCTGCTTAAGTGTCTCTATATCTTCAGAGGATGTTCCTGTTACTATTTCTCCATTACAGCAGAACTCAAGAAAGGAGGTGTGGCAAACAGCTTCTGATGCATTCCCTTCGACAAGTGTTGGGGAAAATGCGGAAAGGCCTCTAAGAAACTTTGATAGGAAAATAAACCGTGTACAGCGTCAGGAATCTCTACCACTCAGTTTACCATCAACAGGGAGTGGTAGGTGTCCTAACTATTCTTCTGCCCACCAAATACCCTTCTCTCACACATTGAACGATTCTCTGGAATTGAGGTTAACAGCTGCCAATTCTGAGACTGCTCAGAACCTATCACGTGCCATGCACATGCATCCTTTTCCTAGGATTGCAGCTACAGATTCTAGAGGGACCAATTCTGCAACTTATAACTCTGGAGAAAGAGCAGTACATGAAGAATTTAATTTAAGACTCTTCTCGAGAGACAGTACCGAGCACCCCTTGCTTGCGCCTGCATCTTCAGAACATGATCCTGCTGCTTGCCAAATGTCCTCCAGTAACGTCAATAATTCTGAAGTTGTACCTCCTACATCTTGGATTGCATCTAGTTCAAATGTCCACTCATTGCCTAATTCCAGCTGGATTGTGAACCATGAAATCCCAACACAGAATCTACAGAGGTTATCAGAATTCAGTCCTTGGCCCCTTTTTCCTTCACTTAGGTCAGTATCTGGTGTTCATAATGGCCAGACTACCTCATCGCCTACTGCCCCTCCTGCCTTGACTCTGGGTACCAGCAACAATCAAGCATATTCAGGATCAGCGTTGTTGATGGAGAGAAGGGGTGATGATGTTCTCTTTCCTCCCCATTCATTACGAGCTTTAGTTGTTGACATTGAGGGAAGACGCCAACTAATATCTGAGATTCGTCAAGTTTTGAATGCAATGCGGAGGGGTGAGAACTTGCAGGCTGAGGATTATATGGTCTTTGACCCTTTTATATATCATGGTATGGCTGAAATGCACGACAGGCACAGTGACATGCGCCTTGATGTAGATAACATGTCATATGAGGAACTGTTGGCATTGGAGGAGCGTATAGGGGATGTGAGCACTGGATTGAGTGAGGATATCATTATGAAGTTGATGAAACAGCGAGTCCATGTATCTTCCATGATAGAATCTTCTACAGATCTGGAACCTTGCAGTATCTGTCAGGAGGAATATGCTGATGGAGTGGATGTTGGTTCACTAGATTGTGGACATGAATTCCACGTGAACTGCATCAAGCAGTGGCTAATGCTGAAGAACCTGTGCCCCATTTGCAAAATAACAGCCTTACCTACATGA 2169 0.45 MPHERNQKTLSKNRNLHLTHPFELRWDILILMQEKRSVGSFPAIVGMMQGPSSSGTDVDHVQNAVEFRLSDYLGASDEIATACLRADVESFGGRNAGEPSSRLNLINQVDDDGLSSSSDAAVEDDGLTPDEKQSEPNNVPFSVSSNTNLHGGQPGIQPFILQGSRSNHITQNVSLDMEHTANRGKGRGAGSAVDIPNTNTRGLDKKQTSFDQIGTSSGSSGCMIWGDGASSSSSLVDWGSSCKRKALECTSGKLHNAGSPSSLVESENGCWPTDPVDLNASSCLSVSISSEDVPVTISPLQQNSRKEVWQTASDAFPSTSVGENAERPLRNFDRKINRVQRQESLPLSLPSTGSGRCPNYSSAHQIPFSHTLNDSLELRLTAANSETAQNLSRAMHMHPFPRIAATDSRGTNSATYNSGERAVHEEFNLRLFSRDSTEHPLLAPASSEHDPAACQMSSSNVNNSEVVPPTSWIASSSNVHSLPNSSWIVNHEIPTQNLQRLSEFSPWPLFPSLRSVSGVHNGQTTSSPTAPPALTLGTSNNQAYSGSALLMERRGDDVLFPPHSLRALVVDIEGRRQLISEIRQVLNAMRRGENLQAEDYMVFDPFIYHGMAEMHDRHSDMRLDVDNMSYEELLALEERIGDVSTGLSEDIIMKLMKQRVHVSSMIESSTDLEPCSICQEEYADGVDVGSLDCGHEFHVNCIKQWLMLKNLCPICKITALPT* 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops1g02493 722 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 637 720 IPR013083 -
Rops1g02493 722 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 177 720 IPR045191 GO:0061630
Rops1g02493 722 ProSiteProfiles Zinc finger RING-type profile. 675 716 IPR001841 -
Rops1g02493 722 SMART ring_2 675 715 IPR001841 -
Rops1g02493 722 MobiDBLite consensus disorder prediction 180 212 - -
Rops1g02493 722 Pfam Ring finger domain 675 716 IPR001841 -
Rops1g02493 722 FunFam E3 ubiquitin-protein ligase MBR2 642 720 - -
Rops1g02493 722 MobiDBLite consensus disorder prediction 109 160 - -
Rops1g02493 722 MobiDBLite consensus disorder prediction 519 538 - -
Rops1g02493 722 MobiDBLite consensus disorder prediction 132 160 - -
Rops1g02493 722 MobiDBLite consensus disorder prediction 193 212 - -
Rops1g02493 722 SUPERFAMILY RING/U-box 674 719 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops1g02493 Rops-Chr1 48076963 48088826 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops1g02493 158 722 C3H Transcription Factor Family AT2G15530 38.731 2.20e-106 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops1g02493 - K19041 gmx:100809024 870.152